Hb_012794_010

Information

Type -
Description -
Location Contig12794: 4166-5479
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07450g
description hypothetical protein
nr
ID XP_011002267.1
description PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
swissprot
ID Q8GYD9
description Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
trembl
ID U5GA11
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s07450g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012794_010 0.0 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
2 Hb_005092_060 0.1104505548 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
3 Hb_000260_810 0.1136523867 - - -
4 Hb_002422_070 0.1151256437 - - PREDICTED: putative protein TPRXL [Malus domestica]
5 Hb_011537_110 0.1161803742 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
6 Hb_011457_090 0.1215036811 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
7 Hb_001158_050 0.1215514746 - - -
8 Hb_000080_210 0.1238126132 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
9 Hb_000635_150 0.1352990704 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
10 Hb_001307_090 0.1370174332 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
11 Hb_002842_020 0.1376309746 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
12 Hb_009113_050 0.1412802592 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
13 Hb_001427_230 0.1442830304 - - conserved hypothetical protein [Ricinus communis]
14 Hb_064441_010 0.1455201376 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
15 Hb_010560_040 0.1457944084 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
16 Hb_027625_010 0.1464713034 - - PREDICTED: protein sym-1-like [Jatropha curcas]
17 Hb_048476_050 0.1485794928 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
18 Hb_000072_180 0.1493502359 - - PREDICTED: EVI5-like protein [Jatropha curcas]
19 Hb_003732_010 0.1493958448 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
20 Hb_006641_010 0.1496024492 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_012794_010 Hb_012794_010 Hb_005092_060 Hb_005092_060 Hb_012794_010--Hb_005092_060 Hb_000260_810 Hb_000260_810 Hb_012794_010--Hb_000260_810 Hb_002422_070 Hb_002422_070 Hb_012794_010--Hb_002422_070 Hb_011537_110 Hb_011537_110 Hb_012794_010--Hb_011537_110 Hb_011457_090 Hb_011457_090 Hb_012794_010--Hb_011457_090 Hb_001158_050 Hb_001158_050 Hb_012794_010--Hb_001158_050 Hb_001360_050 Hb_001360_050 Hb_005092_060--Hb_001360_050 Hb_001235_030 Hb_001235_030 Hb_005092_060--Hb_001235_030 Hb_002759_060 Hb_002759_060 Hb_005092_060--Hb_002759_060 Hb_000635_150 Hb_000635_150 Hb_005092_060--Hb_000635_150 Hb_004218_110 Hb_004218_110 Hb_005092_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_005092_060--Hb_001833_110 Hb_000696_310 Hb_000696_310 Hb_000260_810--Hb_000696_310 Hb_022181_020 Hb_022181_020 Hb_000260_810--Hb_022181_020 Hb_181600_010 Hb_181600_010 Hb_000260_810--Hb_181600_010 Hb_048476_050 Hb_048476_050 Hb_000260_810--Hb_048476_050 Hb_005183_120 Hb_005183_120 Hb_000260_810--Hb_005183_120 Hb_002301_230 Hb_002301_230 Hb_000260_810--Hb_002301_230 Hb_006277_110 Hb_006277_110 Hb_002422_070--Hb_006277_110 Hb_000300_290 Hb_000300_290 Hb_002422_070--Hb_000300_290 Hb_002422_070--Hb_005092_060 Hb_002422_070--Hb_000260_810 Hb_000346_040 Hb_000346_040 Hb_002422_070--Hb_000346_040 Hb_027625_010 Hb_027625_010 Hb_011537_110--Hb_027625_010 Hb_011537_110--Hb_011457_090 Hb_000300_220 Hb_000300_220 Hb_011537_110--Hb_000300_220 Hb_011537_110--Hb_001235_030 Hb_000224_120 Hb_000224_120 Hb_011537_110--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_011537_110--Hb_000046_290 Hb_011457_090--Hb_000224_120 Hb_001153_060 Hb_001153_060 Hb_011457_090--Hb_001153_060 Hb_011457_090--Hb_000300_220 Hb_011457_090--Hb_000635_150 Hb_004336_050 Hb_004336_050 Hb_011457_090--Hb_004336_050 Hb_001158_050--Hb_000260_810 Hb_001080_280 Hb_001080_280 Hb_001158_050--Hb_001080_280 Hb_000817_030 Hb_000817_030 Hb_001158_050--Hb_000817_030 Hb_121089_070 Hb_121089_070 Hb_001158_050--Hb_121089_070 Hb_001519_030 Hb_001519_030 Hb_001158_050--Hb_001519_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.623322 0.103881 0.1221 0.687664 0.175025 1.08009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.61113 1.15862 1.54027 1.13369 0.595709

CAGE analysis