Hb_012796_020

Information

Type -
Description -
Location Contig12796: 11630-21906
Sequence    

Annotation

kegg
ID pmum:103323457
description ADP-ribosylation factor 1
nr
ID XP_008223677.1
description PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
swissprot
ID Q96361
description ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3
trembl
ID A0A067LGX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23013 PE=3 SV=1
Gene Ontology
ID GO:0005622
description adp-ribosylation factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08616: 11749-21979 , PASA_asmbl_08617: 14418-14898
cDNA
(Sanger)
(ID:Location)		 046_G11.ab1: 11770-21601

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012796_020 0.0 - - PREDICTED: ADP-ribosylation factor 1 [Prunus mume]
2 Hb_030736_020 0.0720885253 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002053_140 0.0751982643 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
4 Hb_001699_100 0.086398897 - - PREDICTED: calmodulin-lysine N-methyltransferase [Jatropha curcas]
5 Hb_006618_120 0.0935801562 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
6 Hb_003929_270 0.0953956271 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
7 Hb_001124_020 0.0971026147 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
8 Hb_000453_160 0.0988062694 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
9 Hb_001232_190 0.1004882484 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
10 Hb_004627_040 0.103396035 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
11 Hb_000768_210 0.1041248405 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
12 Hb_000141_080 0.1065314057 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
13 Hb_000300_630 0.1070021396 - - PREDICTED: 5'-adenylylsulfate reductase-like 7 [Jatropha curcas]
14 Hb_001427_160 0.1076020657 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_154948_040 0.107627482 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
16 Hb_000521_160 0.1113308757 - - conserved hypothetical protein [Ricinus communis]
17 Hb_019181_030 0.1119014903 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
18 Hb_004176_070 0.1133722319 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
19 Hb_000916_070 0.1134609986 - - PREDICTED: sister chromatid cohesion protein DCC1-like [Jatropha curcas]
20 Hb_000207_150 0.1144064756 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]

Gene co-expression network

sample Hb_012796_020 Hb_012796_020 Hb_030736_020 Hb_030736_020 Hb_012796_020--Hb_030736_020 Hb_002053_140 Hb_002053_140 Hb_012796_020--Hb_002053_140 Hb_001699_100 Hb_001699_100 Hb_012796_020--Hb_001699_100 Hb_006618_120 Hb_006618_120 Hb_012796_020--Hb_006618_120 Hb_003929_270 Hb_003929_270 Hb_012796_020--Hb_003929_270 Hb_001124_020 Hb_001124_020 Hb_012796_020--Hb_001124_020 Hb_030736_020--Hb_002053_140 Hb_004627_040 Hb_004627_040 Hb_030736_020--Hb_004627_040 Hb_000141_080 Hb_000141_080 Hb_030736_020--Hb_000141_080 Hb_001427_160 Hb_001427_160 Hb_030736_020--Hb_001427_160 Hb_001232_190 Hb_001232_190 Hb_030736_020--Hb_001232_190 Hb_002053_140--Hb_001427_160 Hb_002053_140--Hb_000141_080 Hb_002053_140--Hb_003929_270 Hb_001366_370 Hb_001366_370 Hb_002053_140--Hb_001366_370 Hb_000453_160 Hb_000453_160 Hb_001699_100--Hb_000453_160 Hb_001699_100--Hb_002053_140 Hb_000300_630 Hb_000300_630 Hb_001699_100--Hb_000300_630 Hb_000025_630 Hb_000025_630 Hb_001699_100--Hb_000025_630 Hb_007441_190 Hb_007441_190 Hb_001699_100--Hb_007441_190 Hb_006618_120--Hb_000300_630 Hb_002298_030 Hb_002298_030 Hb_006618_120--Hb_002298_030 Hb_006618_120--Hb_004627_040 Hb_008246_060 Hb_008246_060 Hb_006618_120--Hb_008246_060 Hb_013575_010 Hb_013575_010 Hb_006618_120--Hb_013575_010 Hb_000116_270 Hb_000116_270 Hb_006618_120--Hb_000116_270 Hb_086085_020 Hb_086085_020 Hb_003929_270--Hb_086085_020 Hb_003929_270--Hb_000141_080 Hb_000735_110 Hb_000735_110 Hb_003929_270--Hb_000735_110 Hb_003929_270--Hb_030736_020 Hb_003929_270--Hb_006618_120 Hb_082821_010 Hb_082821_010 Hb_001124_020--Hb_082821_010 Hb_001124_020--Hb_001699_100 Hb_001633_130 Hb_001633_130 Hb_001124_020--Hb_001633_130 Hb_001575_070 Hb_001575_070 Hb_001124_020--Hb_001575_070 Hb_004466_040 Hb_004466_040 Hb_001124_020--Hb_004466_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9559 7.54524 21.2963 44.673 19.7138 20.8504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8269 27.5311 15.1918 10.9626 13.3101

CAGE analysis