Hb_012799_020

Information

Type -
Description -
Location Contig12799: 5125-6602
Sequence    

Annotation

kegg
ID rcu:RCOM_1495980
description metal ion binding protein, putative
nr
ID XP_002510790.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R9B5
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1495980 PE=4 SV=1
Gene Ontology
ID GO:0046872
description metal ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08624: 5245-6216 , PASA_asmbl_08625: 5386-6216 , PASA_asmbl_08626: 5386-5727
cDNA
(Sanger)
(ID:Location)		 002_G19.ab1: 5245-6208 , 013_G06.ab1: 5288-6216 , 018_L01.ab1: 5233-6208 , 033_N05.ab1: 5283-6216 , 034_O14.ab1: 5282-6209 , 037_G07.ab1: 5245-6208

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_020 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_000453_300 0.1407149438 - - latex cystatin [Hevea brasiliensis]
3 Hb_107504_010 0.1429769731 - - -
4 Hb_001936_140 0.1599515372 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
5 Hb_002918_040 0.1814229246 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
6 Hb_004209_030 0.1854062309 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
7 Hb_000792_120 0.2014436237 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
8 Hb_168711_010 0.2014871265 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 [Sesamum indicum]
9 Hb_000836_140 0.2017605618 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
10 Hb_021056_010 0.2038760623 - - unnamed protein product [Vitis vinifera]
11 Hb_008887_040 0.2056269725 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
12 Hb_001434_070 0.2057958506 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
13 Hb_054074_010 0.2058873789 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
14 Hb_000567_280 0.2081604452 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
15 Hb_003050_070 0.2125153269 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000780_210 0.2126841538 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
17 Hb_000235_010 0.2148839399 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
18 Hb_000215_180 0.2150969909 - - hypothetical protein 17 [Hevea brasiliensis]
19 Hb_004650_100 0.2153071392 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
20 Hb_001377_380 0.2159151857 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]

Gene co-expression network

sample Hb_012799_020 Hb_012799_020 Hb_000453_300 Hb_000453_300 Hb_012799_020--Hb_000453_300 Hb_107504_010 Hb_107504_010 Hb_012799_020--Hb_107504_010 Hb_001936_140 Hb_001936_140 Hb_012799_020--Hb_001936_140 Hb_002918_040 Hb_002918_040 Hb_012799_020--Hb_002918_040 Hb_004209_030 Hb_004209_030 Hb_012799_020--Hb_004209_030 Hb_000792_120 Hb_000792_120 Hb_012799_020--Hb_000792_120 Hb_001507_070 Hb_001507_070 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_104010_010 Hb_104010_010 Hb_000453_300--Hb_104010_010 Hb_000453_300--Hb_004209_030 Hb_003050_070 Hb_003050_070 Hb_000453_300--Hb_003050_070 Hb_107504_010--Hb_001936_140 Hb_107504_010--Hb_002918_040 Hb_004108_090 Hb_004108_090 Hb_107504_010--Hb_004108_090 Hb_054074_010 Hb_054074_010 Hb_107504_010--Hb_054074_010 Hb_107504_010--Hb_000453_300 Hb_001936_140--Hb_054074_010 Hb_000567_280 Hb_000567_280 Hb_001936_140--Hb_000567_280 Hb_004650_100 Hb_004650_100 Hb_001936_140--Hb_004650_100 Hb_006570_070 Hb_006570_070 Hb_001936_140--Hb_006570_070 Hb_002918_040--Hb_000453_300 Hb_010174_010 Hb_010174_010 Hb_002918_040--Hb_010174_010 Hb_002918_040--Hb_001936_140 Hb_002918_040--Hb_004650_100 Hb_001434_070 Hb_001434_070 Hb_004209_030--Hb_001434_070 Hb_001377_380 Hb_001377_380 Hb_004209_030--Hb_001377_380 Hb_000260_200 Hb_000260_200 Hb_004209_030--Hb_000260_200 Hb_004545_130 Hb_004545_130 Hb_004209_030--Hb_004545_130 Hb_000635_080 Hb_000635_080 Hb_004209_030--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_004209_030--Hb_000780_210 Hb_012022_100 Hb_012022_100 Hb_000792_120--Hb_012022_100 Hb_001579_140 Hb_001579_140 Hb_000792_120--Hb_001579_140 Hb_000300_210 Hb_000300_210 Hb_000792_120--Hb_000300_210 Hb_000329_660 Hb_000329_660 Hb_000792_120--Hb_000329_660 Hb_000387_060 Hb_000387_060 Hb_000792_120--Hb_000387_060 Hb_008066_030 Hb_008066_030 Hb_000792_120--Hb_008066_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.25591 2.03602 2.51952 7.09988 2.42755 2.95435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
102.005 58.9846 13.6013 14.6429 4.37822

CAGE analysis