Hb_012799_030

Information

Type -
Description -
Location Contig12799: 7085-13527
Sequence    

Annotation

kegg
ID rcu:RCOM_1495990
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012090261.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
swissprot
ID Q9M1D8
description Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1
trembl
ID B9R9B6
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1495990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08627: 7939-10866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
2 Hb_000034_040 0.0682256676 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
3 Hb_000201_110 0.0756897742 - - hypothetical protein JCGZ_21690 [Jatropha curcas]
4 Hb_000193_310 0.076321049 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
5 Hb_007416_160 0.0832852199 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
6 Hb_006711_100 0.0844260741 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
7 Hb_000803_260 0.0861363234 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
8 Hb_004225_050 0.0883964931 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
9 Hb_006649_050 0.0893095612 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
10 Hb_000739_310 0.089532421 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
11 Hb_028912_050 0.089955629 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
12 Hb_000318_390 0.0901624283 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
13 Hb_000707_050 0.0913596767 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
14 Hb_000796_040 0.0919914946 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002725_120 0.0938261439 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
16 Hb_001675_180 0.0939944868 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
17 Hb_000352_190 0.0949833105 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
18 Hb_003938_080 0.0974319306 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
19 Hb_003440_050 0.0979121618 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
20 Hb_012656_030 0.0979835362 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012799_030 Hb_012799_030 Hb_000034_040 Hb_000034_040 Hb_012799_030--Hb_000034_040 Hb_000201_110 Hb_000201_110 Hb_012799_030--Hb_000201_110 Hb_000193_310 Hb_000193_310 Hb_012799_030--Hb_000193_310 Hb_007416_160 Hb_007416_160 Hb_012799_030--Hb_007416_160 Hb_006711_100 Hb_006711_100 Hb_012799_030--Hb_006711_100 Hb_000803_260 Hb_000803_260 Hb_012799_030--Hb_000803_260 Hb_006915_070 Hb_006915_070 Hb_000034_040--Hb_006915_070 Hb_015884_030 Hb_015884_030 Hb_000034_040--Hb_015884_030 Hb_003938_080 Hb_003938_080 Hb_000034_040--Hb_003938_080 Hb_009411_010 Hb_009411_010 Hb_000034_040--Hb_009411_010 Hb_002681_070 Hb_002681_070 Hb_000034_040--Hb_002681_070 Hb_009548_020 Hb_009548_020 Hb_000201_110--Hb_009548_020 Hb_001329_140 Hb_001329_140 Hb_000201_110--Hb_001329_140 Hb_028912_050 Hb_028912_050 Hb_000201_110--Hb_028912_050 Hb_006649_050 Hb_006649_050 Hb_000201_110--Hb_006649_050 Hb_001675_180 Hb_001675_180 Hb_000201_110--Hb_001675_180 Hb_000318_390 Hb_000318_390 Hb_000193_310--Hb_000318_390 Hb_012656_030 Hb_012656_030 Hb_000193_310--Hb_012656_030 Hb_001439_140 Hb_001439_140 Hb_000193_310--Hb_001439_140 Hb_000193_310--Hb_006711_100 Hb_000707_050 Hb_000707_050 Hb_000193_310--Hb_000707_050 Hb_000796_040 Hb_000796_040 Hb_007416_160--Hb_000796_040 Hb_000031_170 Hb_000031_170 Hb_007416_160--Hb_000031_170 Hb_001205_230 Hb_001205_230 Hb_007416_160--Hb_001205_230 Hb_007416_160--Hb_000034_040 Hb_003440_050 Hb_003440_050 Hb_007416_160--Hb_003440_050 Hb_006711_100--Hb_000707_050 Hb_004225_050 Hb_004225_050 Hb_006711_100--Hb_004225_050 Hb_000388_090 Hb_000388_090 Hb_006711_100--Hb_000388_090 Hb_000883_060 Hb_000883_060 Hb_006711_100--Hb_000883_060 Hb_000352_190 Hb_000352_190 Hb_006711_100--Hb_000352_190 Hb_000803_260--Hb_001329_140 Hb_000803_260--Hb_000318_390 Hb_001862_180 Hb_001862_180 Hb_000803_260--Hb_001862_180 Hb_000684_250 Hb_000684_250 Hb_000803_260--Hb_000684_250 Hb_001472_090 Hb_001472_090 Hb_000803_260--Hb_001472_090 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52657 2.89512 1.57408 1.80695 3.97587 5.29465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.1926 2.66598 5.3191 2.1886 5.21916

CAGE analysis