Hb_012799_050

Information

Type -
Description -
Location Contig12799: 25589-29008
Sequence    

Annotation

kegg
ID cmo:103503454
description remorin
nr
ID XP_012090265.1
description PREDICTED: remorin [Jatropha curcas]
swissprot
ID P93788
description Remorin OS=Solanum tuberosum PE=1 SV=1
trembl
ID A0A067JEJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26117 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08632: 25901-28865 , PASA_asmbl_08633: 25901-28835 , PASA_asmbl_08634: 25878-28865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_050 0.0 - - PREDICTED: remorin [Jatropha curcas]
2 Hb_111552_010 0.101257281 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
3 Hb_003125_220 0.1039931677 - - PREDICTED: CBS domain-containing protein CBSCBSPB1 [Jatropha curcas]
4 Hb_000453_030 0.1058732906 - - Protein kinase capable of phosphorylating tyrosine family protein [Populus trichocarpa]
5 Hb_088584_010 0.1096042486 - - hypothetical protein POPTR_0016s08470g [Populus trichocarpa]
6 Hb_001301_270 0.1102464959 - - PREDICTED: heat shock 70 kDa protein 16 [Jatropha curcas]
7 Hb_003408_060 0.1134566458 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
8 Hb_001178_030 0.1162486807 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
9 Hb_000922_060 0.119028719 - - kinesin light chain, putative [Ricinus communis]
10 Hb_000069_610 0.1205016949 - - PREDICTED: protein SUPPRESSOR OF PHYA-105 1 [Jatropha curcas]
11 Hb_001329_250 0.1213484503 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105642692 isoform X1 [Jatropha curcas]
12 Hb_004994_350 0.1215210694 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
13 Hb_000388_150 0.1219717933 - - hypothetical protein JCGZ_21651 [Jatropha curcas]
14 Hb_001017_030 0.1219959863 - - copine, putative [Ricinus communis]
15 Hb_022092_030 0.1237619165 - - PREDICTED: lipoyl synthase, mitochondrial [Jatropha curcas]
16 Hb_003682_070 0.1265434216 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
17 Hb_000212_420 0.1267485349 - - PREDICTED: probable protein phosphatase 2C 33 [Jatropha curcas]
18 Hb_005062_060 0.1288617018 - - PREDICTED: uncharacterized protein At4g06598-like [Jatropha curcas]
19 Hb_024184_010 0.1290491127 - - PREDICTED: clustered mitochondria protein-like isoform X1 [Citrus sinensis]
20 Hb_006970_020 0.1297749292 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]

Gene co-expression network

sample Hb_012799_050 Hb_012799_050 Hb_111552_010 Hb_111552_010 Hb_012799_050--Hb_111552_010 Hb_003125_220 Hb_003125_220 Hb_012799_050--Hb_003125_220 Hb_000453_030 Hb_000453_030 Hb_012799_050--Hb_000453_030 Hb_088584_010 Hb_088584_010 Hb_012799_050--Hb_088584_010 Hb_001301_270 Hb_001301_270 Hb_012799_050--Hb_001301_270 Hb_003408_060 Hb_003408_060 Hb_012799_050--Hb_003408_060 Hb_004774_090 Hb_004774_090 Hb_111552_010--Hb_004774_090 Hb_001178_030 Hb_001178_030 Hb_111552_010--Hb_001178_030 Hb_000452_030 Hb_000452_030 Hb_111552_010--Hb_000452_030 Hb_000586_020 Hb_000586_020 Hb_111552_010--Hb_000586_020 Hb_006846_170 Hb_006846_170 Hb_111552_010--Hb_006846_170 Hb_000956_040 Hb_000956_040 Hb_111552_010--Hb_000956_040 Hb_024184_010 Hb_024184_010 Hb_003125_220--Hb_024184_010 Hb_000169_020 Hb_000169_020 Hb_003125_220--Hb_000169_020 Hb_001776_020 Hb_001776_020 Hb_003125_220--Hb_001776_020 Hb_022092_030 Hb_022092_030 Hb_003125_220--Hb_022092_030 Hb_001627_040 Hb_001627_040 Hb_003125_220--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_003125_220--Hb_007545_010 Hb_002684_020 Hb_002684_020 Hb_000453_030--Hb_002684_020 Hb_001279_020 Hb_001279_020 Hb_000453_030--Hb_001279_020 Hb_001396_020 Hb_001396_020 Hb_000453_030--Hb_001396_020 Hb_006970_020 Hb_006970_020 Hb_000453_030--Hb_006970_020 Hb_005062_060 Hb_005062_060 Hb_000453_030--Hb_005062_060 Hb_004032_320 Hb_004032_320 Hb_000453_030--Hb_004032_320 Hb_088584_010--Hb_006846_170 Hb_017214_040 Hb_017214_040 Hb_088584_010--Hb_017214_040 Hb_002249_020 Hb_002249_020 Hb_088584_010--Hb_002249_020 Hb_000069_610 Hb_000069_610 Hb_088584_010--Hb_000069_610 Hb_000179_190 Hb_000179_190 Hb_088584_010--Hb_000179_190 Hb_088584_010--Hb_111552_010 Hb_032202_220 Hb_032202_220 Hb_001301_270--Hb_032202_220 Hb_001301_270--Hb_006970_020 Hb_074197_040 Hb_074197_040 Hb_001301_270--Hb_074197_040 Hb_000078_140 Hb_000078_140 Hb_001301_270--Hb_000078_140 Hb_000815_300 Hb_000815_300 Hb_001301_270--Hb_000815_300 Hb_001329_250 Hb_001329_250 Hb_001301_270--Hb_001329_250 Hb_003408_060--Hb_111552_010 Hb_003687_130 Hb_003687_130 Hb_003408_060--Hb_003687_130 Hb_001766_070 Hb_001766_070 Hb_003408_060--Hb_001766_070 Hb_003408_060--Hb_088584_010 Hb_003177_070 Hb_003177_070 Hb_003408_060--Hb_003177_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5799 36.0243 47.4183 48.2936 12.0433 27.8733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3641 9.05732 33.8626 16.2077 60.5996

CAGE analysis