Hb_012799_060

Information

Type transcription factor
Description TF Family: MYB
Location Contig12799: 29266-31822
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13240g
description POPTRDRAFT_422546; hypothetical protein
nr
ID XP_012090267.1
description PREDICTED: transcription factor MYB3-like [Jatropha curcas]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID A0A067JEP1
description MYB family protein OS=Jatropha curcas GN=JCGZ_26118 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 308-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08635: 29453-31810
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_060 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
2 Hb_000580_170 0.0535330852 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
3 Hb_000078_030 0.0815460364 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001741_080 0.0881320533 rubber biosynthesis Gene Name: REF8 small rubber particle protein [Hevea brasiliensis]
5 Hb_030765_020 0.0939138652 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_005016_130 0.0939179959 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
7 Hb_003540_230 0.0959444689 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
8 Hb_029584_140 0.0994735242 - - senescence-associated family protein [Populus trichocarpa]
9 Hb_001102_010 0.104786748 - - PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like isoform X2 [Glycine max]
10 Hb_000284_010 0.1078532857 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
11 Hb_010872_060 0.1096180647 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
12 Hb_060668_010 0.1113031522 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
13 Hb_000143_050 0.1163706057 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
14 Hb_000062_580 0.1186489701 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000178_110 0.1189398706 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002387_060 0.1191802893 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000184_180 0.1202915019 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
18 Hb_002291_030 0.1210924374 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
19 Hb_000787_070 0.1211400402 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
20 Hb_003038_180 0.1216674648 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]

Gene co-expression network

sample Hb_012799_060 Hb_012799_060 Hb_000580_170 Hb_000580_170 Hb_012799_060--Hb_000580_170 Hb_000078_030 Hb_000078_030 Hb_012799_060--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_012799_060--Hb_001741_080 Hb_030765_020 Hb_030765_020 Hb_012799_060--Hb_030765_020 Hb_005016_130 Hb_005016_130 Hb_012799_060--Hb_005016_130 Hb_003540_230 Hb_003540_230 Hb_012799_060--Hb_003540_230 Hb_000580_170--Hb_000078_030 Hb_000580_170--Hb_001741_080 Hb_000580_170--Hb_003540_230 Hb_000580_170--Hb_005016_130 Hb_001102_010 Hb_001102_010 Hb_000580_170--Hb_001102_010 Hb_000193_230 Hb_000193_230 Hb_000078_030--Hb_000193_230 Hb_000284_010 Hb_000284_010 Hb_000078_030--Hb_000284_010 Hb_000078_030--Hb_005016_130 Hb_115919_020 Hb_115919_020 Hb_000078_030--Hb_115919_020 Hb_000078_030--Hb_001102_010 Hb_002298_040 Hb_002298_040 Hb_000078_030--Hb_002298_040 Hb_060668_010 Hb_060668_010 Hb_001741_080--Hb_060668_010 Hb_001741_080--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_001741_080--Hb_000041_070 Hb_001741_080--Hb_000078_030 Hb_000444_030 Hb_000444_030 Hb_001741_080--Hb_000444_030 Hb_000143_050 Hb_000143_050 Hb_030765_020--Hb_000143_050 Hb_030765_020--Hb_000078_030 Hb_030765_020--Hb_060668_010 Hb_030765_020--Hb_001741_080 Hb_030765_020--Hb_000580_170 Hb_005016_130--Hb_115919_020 Hb_000787_070 Hb_000787_070 Hb_005016_130--Hb_000787_070 Hb_010578_090 Hb_010578_090 Hb_005016_130--Hb_010578_090 Hb_005016_130--Hb_000284_010 Hb_002235_230 Hb_002235_230 Hb_003540_230--Hb_002235_230 Hb_029584_140 Hb_029584_140 Hb_003540_230--Hb_029584_140 Hb_003540_230--Hb_005016_130 Hb_003038_180 Hb_003038_180 Hb_003540_230--Hb_003038_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.26 1.25864 0.849197 2.45906 13.0264 19.9646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.982 34.0952 27.1818 1.93838 0.220076

CAGE analysis