Hb_012799_100

Information

Type -
Description -
Location Contig12799: 51982-53646
Sequence    

Annotation

kegg
ID vvi:100247084
description pentatricopeptide repeat-containing protein At3g29230-like
nr
ID XP_012090268.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
swissprot
ID Q9LS72
description Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
trembl
ID A0A067JQM2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_100 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
2 Hb_002205_130 0.1010485339 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
3 Hb_000019_060 0.1079439725 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
4 Hb_011030_020 0.1128234398 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
5 Hb_001189_050 0.1186880663 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
6 Hb_003642_050 0.1266066927 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
7 Hb_168319_030 0.1288049235 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
8 Hb_000366_090 0.1304010978 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
9 Hb_000327_220 0.130562664 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
10 Hb_004128_180 0.1390753562 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002284_200 0.140242501 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
12 Hb_019654_090 0.1403147549 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
13 Hb_005542_060 0.1417174875 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_003581_260 0.1426460131 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
15 Hb_029510_040 0.1445783579 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
16 Hb_000125_030 0.1468051977 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
17 Hb_001159_080 0.1500059817 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
18 Hb_000016_190 0.1509339162 - - ABC transporter B family member 28 [Glycine soja]
19 Hb_000110_320 0.1525007944 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
20 Hb_003994_190 0.1528820897 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012799_100 Hb_012799_100 Hb_002205_130 Hb_002205_130 Hb_012799_100--Hb_002205_130 Hb_000019_060 Hb_000019_060 Hb_012799_100--Hb_000019_060 Hb_011030_020 Hb_011030_020 Hb_012799_100--Hb_011030_020 Hb_001189_050 Hb_001189_050 Hb_012799_100--Hb_001189_050 Hb_003642_050 Hb_003642_050 Hb_012799_100--Hb_003642_050 Hb_168319_030 Hb_168319_030 Hb_012799_100--Hb_168319_030 Hb_002205_130--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_002205_130--Hb_005162_070 Hb_002284_200 Hb_002284_200 Hb_002205_130--Hb_002284_200 Hb_019263_020 Hb_019263_020 Hb_002205_130--Hb_019263_020 Hb_002027_040 Hb_002027_040 Hb_002205_130--Hb_002027_040 Hb_000019_060--Hb_168319_030 Hb_007075_050 Hb_007075_050 Hb_000019_060--Hb_007075_050 Hb_000366_090 Hb_000366_090 Hb_000019_060--Hb_000366_090 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_000019_060--Hb_011030_020 Hb_011030_020--Hb_005162_070 Hb_011030_020--Hb_001189_050 Hb_010608_050 Hb_010608_050 Hb_011030_020--Hb_010608_050 Hb_008695_100 Hb_008695_100 Hb_011030_020--Hb_008695_100 Hb_000617_150 Hb_000617_150 Hb_011030_020--Hb_000617_150 Hb_001189_050--Hb_000019_060 Hb_001493_180 Hb_001493_180 Hb_001189_050--Hb_001493_180 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_001357_010 Hb_001357_010 Hb_001189_050--Hb_001357_010 Hb_000125_030 Hb_000125_030 Hb_003642_050--Hb_000125_030 Hb_003581_260 Hb_003581_260 Hb_003642_050--Hb_003581_260 Hb_003504_020 Hb_003504_020 Hb_003642_050--Hb_003504_020 Hb_001159_080 Hb_001159_080 Hb_003642_050--Hb_001159_080 Hb_001096_110 Hb_001096_110 Hb_003642_050--Hb_001096_110 Hb_168319_030--Hb_000366_090 Hb_004375_150 Hb_004375_150 Hb_168319_030--Hb_004375_150 Hb_027472_170 Hb_027472_170 Hb_168319_030--Hb_027472_170 Hb_000117_090 Hb_000117_090 Hb_168319_030--Hb_000117_090 Hb_021409_030 Hb_021409_030 Hb_168319_030--Hb_021409_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.658672 0.542195 0.530842 0.282513 0.390669 0.666852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.887 2.09359 3.94822 0.5216 0.595546

CAGE analysis