Hb_012799_130

Information

Type -
Description -
Location Contig12799: 72232-78563
Sequence    

Annotation

kegg
ID tcc:TCM_015153
description Single-stranded DNA endonuclease family protein
nr
ID XP_012090273.1
description PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
swissprot
ID Q9M2Z3
description Flap endonuclease GEN-like 2 OS=Arabidopsis thaliana GN=GEN2 PE=2 SV=2
trembl
ID A0A061G1D7
description Single-stranded DNA endonuclease family protein OS=Theobroma cacao GN=TCM_015153 PE=4 SV=1
Gene Ontology
ID GO:0005634
description flap endonuclease gen-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08643: 72534-76763 , PASA_asmbl_08644: 72534-73939 , PASA_asmbl_08645: 73954-76763
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_130 0.0 - - PREDICTED: flap endonuclease GEN-like 2 [Jatropha curcas]
2 Hb_010691_060 0.0780592504 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
3 Hb_002272_180 0.0797667582 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
4 Hb_185830_020 0.0823137494 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_012490_030 0.0834727658 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
6 Hb_006157_020 0.0852828525 - - PREDICTED: nucleolin 1-like isoform X2 [Jatropha curcas]
7 Hb_004881_020 0.0867545776 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
8 Hb_000271_090 0.0869203254 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_007594_130 0.0894399703 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
10 Hb_004450_010 0.0918466995 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
11 Hb_040262_010 0.0926110011 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
12 Hb_003952_070 0.0934717902 - - ubiquitin-protein ligase, putative [Ricinus communis]
13 Hb_144598_030 0.0941627694 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
14 Hb_142439_010 0.0954415838 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
15 Hb_000189_340 0.0961278129 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
16 Hb_000003_160 0.0973095761 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
17 Hb_022250_130 0.0987980147 - - inositol hexaphosphate kinase, putative [Ricinus communis]
18 Hb_001766_150 0.0996961829 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
19 Hb_001579_320 0.1004337628 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
20 Hb_001430_120 0.1008643679 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_012799_130 Hb_012799_130 Hb_010691_060 Hb_010691_060 Hb_012799_130--Hb_010691_060 Hb_002272_180 Hb_002272_180 Hb_012799_130--Hb_002272_180 Hb_185830_020 Hb_185830_020 Hb_012799_130--Hb_185830_020 Hb_012490_030 Hb_012490_030 Hb_012799_130--Hb_012490_030 Hb_006157_020 Hb_006157_020 Hb_012799_130--Hb_006157_020 Hb_004881_020 Hb_004881_020 Hb_012799_130--Hb_004881_020 Hb_001766_150 Hb_001766_150 Hb_010691_060--Hb_001766_150 Hb_000157_030 Hb_000157_030 Hb_010691_060--Hb_000157_030 Hb_003266_050 Hb_003266_050 Hb_010691_060--Hb_003266_050 Hb_010691_060--Hb_185830_020 Hb_002391_300 Hb_002391_300 Hb_010691_060--Hb_002391_300 Hb_003058_130 Hb_003058_130 Hb_010691_060--Hb_003058_130 Hb_020719_030 Hb_020719_030 Hb_002272_180--Hb_020719_030 Hb_000364_060 Hb_000364_060 Hb_002272_180--Hb_000364_060 Hb_002067_040 Hb_002067_040 Hb_002272_180--Hb_002067_040 Hb_002272_180--Hb_012490_030 Hb_004450_010 Hb_004450_010 Hb_002272_180--Hb_004450_010 Hb_033834_060 Hb_033834_060 Hb_002272_180--Hb_033834_060 Hb_003847_080 Hb_003847_080 Hb_185830_020--Hb_003847_080 Hb_002982_040 Hb_002982_040 Hb_185830_020--Hb_002982_040 Hb_000956_030 Hb_000956_030 Hb_185830_020--Hb_000956_030 Hb_000103_180 Hb_000103_180 Hb_185830_020--Hb_000103_180 Hb_022250_130 Hb_022250_130 Hb_185830_020--Hb_022250_130 Hb_000429_120 Hb_000429_120 Hb_012490_030--Hb_000429_120 Hb_012490_030--Hb_020719_030 Hb_001866_110 Hb_001866_110 Hb_012490_030--Hb_001866_110 Hb_000889_020 Hb_000889_020 Hb_012490_030--Hb_000889_020 Hb_002784_060 Hb_002784_060 Hb_012490_030--Hb_002784_060 Hb_000271_090 Hb_000271_090 Hb_006157_020--Hb_000271_090 Hb_004429_100 Hb_004429_100 Hb_006157_020--Hb_004429_100 Hb_006157_020--Hb_033834_060 Hb_004689_050 Hb_004689_050 Hb_006157_020--Hb_004689_050 Hb_031284_040 Hb_031284_040 Hb_006157_020--Hb_031284_040 Hb_007594_130 Hb_007594_130 Hb_004881_020--Hb_007594_130 Hb_003952_070 Hb_003952_070 Hb_004881_020--Hb_003952_070 Hb_006252_040 Hb_006252_040 Hb_004881_020--Hb_006252_040 Hb_000212_240 Hb_000212_240 Hb_004881_020--Hb_000212_240 Hb_103012_010 Hb_103012_010 Hb_004881_020--Hb_103012_010 Hb_002671_100 Hb_002671_100 Hb_004881_020--Hb_002671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.68594 3.2484 2.62432 3.44004 6.23816 10.7735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.74728 5.84256 2.60572 5.57088 1.87222

CAGE analysis