Hb_012799_140

Information

Type -
Description -
Location Contig12799: 79934-83136
Sequence    

Annotation

kegg
ID rcu:RCOM_1496460
description steroid binding protein, putative (EC:1.3.1.74)
nr
ID XP_012090276.1
description PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
swissprot
ID Q9M2Z4
description Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1
trembl
ID A0A067JHP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26129 PE=4 SV=1
Gene Ontology
ID GO:0005634
description membrane steroid-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08646: 80604-83077 , PASA_asmbl_08647: 80090-80763
cDNA
(Sanger)
(ID:Location)		 007_J02.ab1: 80604-82833 , 021_F08.ab1: 80608-82790 , 030_D04.ab1: 80604-82789 , 030_N18.ab1: 80604-82829

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_140 0.0 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
2 Hb_001489_100 0.0852712812 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
3 Hb_000174_150 0.0871301931 - - stearoyl-acyl-carrier protein desaturase [Ricinus communis]
4 Hb_000059_020 0.0919951781 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
5 Hb_000069_480 0.0949202726 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000418_010 0.0966694812 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
7 Hb_002477_250 0.0978931109 - - DNA-directed RNA polymerase I 49 kDa polypeptide, putative [Ricinus communis]
8 Hb_000069_130 0.1035754013 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
9 Hb_000787_150 0.1036847317 - - PREDICTED: protein NDR1-like [Jatropha curcas]
10 Hb_004128_130 0.1043361942 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
11 Hb_001135_120 0.1049870059 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
12 Hb_000671_080 0.1055531547 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
13 Hb_003470_030 0.1057236161 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
14 Hb_003092_060 0.1058255791 - - calcineurin-like phosphoesterase [Manihot esculenta]
15 Hb_000580_030 0.1064557328 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
16 Hb_002284_170 0.1075079106 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
17 Hb_002325_040 0.1086252157 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
18 Hb_000046_070 0.108825007 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
19 Hb_000940_200 0.1094717901 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
20 Hb_000120_910 0.1102063939 - - plant ubiquilin, putative [Ricinus communis]

Gene co-expression network

sample Hb_012799_140 Hb_012799_140 Hb_001489_100 Hb_001489_100 Hb_012799_140--Hb_001489_100 Hb_000174_150 Hb_000174_150 Hb_012799_140--Hb_000174_150 Hb_000059_020 Hb_000059_020 Hb_012799_140--Hb_000059_020 Hb_000069_480 Hb_000069_480 Hb_012799_140--Hb_000069_480 Hb_000418_010 Hb_000418_010 Hb_012799_140--Hb_000418_010 Hb_002477_250 Hb_002477_250 Hb_012799_140--Hb_002477_250 Hb_000580_030 Hb_000580_030 Hb_001489_100--Hb_000580_030 Hb_002284_170 Hb_002284_170 Hb_001489_100--Hb_002284_170 Hb_008937_010 Hb_008937_010 Hb_001489_100--Hb_008937_010 Hb_001033_050 Hb_001033_050 Hb_001489_100--Hb_001033_050 Hb_008253_020 Hb_008253_020 Hb_001489_100--Hb_008253_020 Hb_001135_120 Hb_001135_120 Hb_001489_100--Hb_001135_120 Hb_001584_350 Hb_001584_350 Hb_000174_150--Hb_001584_350 Hb_000977_300 Hb_000977_300 Hb_000174_150--Hb_000977_300 Hb_000139_320 Hb_000139_320 Hb_000174_150--Hb_000139_320 Hb_005288_140 Hb_005288_140 Hb_000174_150--Hb_005288_140 Hb_001171_030 Hb_001171_030 Hb_000174_150--Hb_001171_030 Hb_000340_030 Hb_000340_030 Hb_000174_150--Hb_000340_030 Hb_000862_040 Hb_000862_040 Hb_000059_020--Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_000009_330 Hb_000009_330 Hb_000059_020--Hb_000009_330 Hb_003912_040 Hb_003912_040 Hb_000069_480--Hb_003912_040 Hb_004128_130 Hb_004128_130 Hb_000069_480--Hb_004128_130 Hb_004429_010 Hb_004429_010 Hb_000069_480--Hb_004429_010 Hb_000069_480--Hb_001489_100 Hb_000069_480--Hb_008253_020 Hb_000069_480--Hb_000418_010 Hb_000418_010--Hb_000197_030 Hb_000671_080 Hb_000671_080 Hb_000418_010--Hb_000671_080 Hb_001257_100 Hb_001257_100 Hb_000418_010--Hb_001257_100 Hb_000418_010--Hb_001489_100 Hb_006198_020 Hb_006198_020 Hb_000418_010--Hb_006198_020 Hb_002325_040 Hb_002325_040 Hb_002477_250--Hb_002325_040 Hb_000809_160 Hb_000809_160 Hb_002477_250--Hb_000809_160 Hb_001754_030 Hb_001754_030 Hb_002477_250--Hb_001754_030 Hb_003470_030 Hb_003470_030 Hb_002477_250--Hb_003470_030 Hb_000264_070 Hb_000264_070 Hb_002477_250--Hb_000264_070 Hb_002477_250--Hb_001135_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
131.944 213.44 108.91 160.323 108.016 69.3311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.3186 53.3534 37.9666 123.04 75.7158

CAGE analysis