Hb_012799_180

Information

Type -
Description -
Location Contig12799: 103292-105174
Sequence    

Annotation

kegg
ID vvi:100264391
description probable receptor-like protein kinase At1g11050
nr
ID XP_002284588.1
description PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
swissprot
ID O04086
description Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1
trembl
ID F6H0I8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g01960 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g11050

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08656: 103577-105035
cDNA
(Sanger)
(ID:Location)		 052_B04r.ab1: 105441-106066

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012799_180 0.0 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
2 Hb_001703_030 0.0763158171 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
3 Hb_085781_010 0.0835551754 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
4 Hb_011867_010 0.0900336299 - - PREDICTED: uncharacterized protein LOC105641409 [Jatropha curcas]
5 Hb_008554_030 0.0900622715 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
6 Hb_017904_010 0.0903790412 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
7 Hb_001776_140 0.0906543969 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_000069_110 0.0910547215 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
9 Hb_001545_120 0.0924740488 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
10 Hb_002027_250 0.0935959055 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002681_070 0.0974585242 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]
12 Hb_001019_190 0.0977268958 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002044_080 0.0984804945 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
14 Hb_009838_080 0.1019884213 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
15 Hb_000107_620 0.1023711258 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
16 Hb_000120_790 0.1025455197 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
17 Hb_007632_220 0.1027127414 - - RNA-binding protein, putative [Ricinus communis]
18 Hb_000928_210 0.1032048328 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
19 Hb_000243_030 0.1042617043 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
20 Hb_111985_050 0.1048753503 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012799_180 Hb_012799_180 Hb_001703_030 Hb_001703_030 Hb_012799_180--Hb_001703_030 Hb_085781_010 Hb_085781_010 Hb_012799_180--Hb_085781_010 Hb_011867_010 Hb_011867_010 Hb_012799_180--Hb_011867_010 Hb_008554_030 Hb_008554_030 Hb_012799_180--Hb_008554_030 Hb_017904_010 Hb_017904_010 Hb_012799_180--Hb_017904_010 Hb_001776_140 Hb_001776_140 Hb_012799_180--Hb_001776_140 Hb_000046_280 Hb_000046_280 Hb_001703_030--Hb_000046_280 Hb_009838_080 Hb_009838_080 Hb_001703_030--Hb_009838_080 Hb_132835_010 Hb_132835_010 Hb_001703_030--Hb_132835_010 Hb_001703_030--Hb_011867_010 Hb_001703_030--Hb_017904_010 Hb_000796_220 Hb_000796_220 Hb_085781_010--Hb_000796_220 Hb_007632_220 Hb_007632_220 Hb_085781_010--Hb_007632_220 Hb_007951_050 Hb_007951_050 Hb_085781_010--Hb_007951_050 Hb_009048_040 Hb_009048_040 Hb_085781_010--Hb_009048_040 Hb_011673_030 Hb_011673_030 Hb_085781_010--Hb_011673_030 Hb_006031_020 Hb_006031_020 Hb_011867_010--Hb_006031_020 Hb_000069_110 Hb_000069_110 Hb_011867_010--Hb_000069_110 Hb_002609_020 Hb_002609_020 Hb_011867_010--Hb_002609_020 Hb_000270_270 Hb_000270_270 Hb_011867_010--Hb_000270_270 Hb_000479_010 Hb_000479_010 Hb_011867_010--Hb_000479_010 Hb_027295_050 Hb_027295_050 Hb_008554_030--Hb_027295_050 Hb_017358_030 Hb_017358_030 Hb_008554_030--Hb_017358_030 Hb_007632_030 Hb_007632_030 Hb_008554_030--Hb_007632_030 Hb_007389_010 Hb_007389_010 Hb_008554_030--Hb_007389_010 Hb_000165_250 Hb_000165_250 Hb_008554_030--Hb_000165_250 Hb_005496_130 Hb_005496_130 Hb_008554_030--Hb_005496_130 Hb_002205_070 Hb_002205_070 Hb_017904_010--Hb_002205_070 Hb_000107_620 Hb_000107_620 Hb_017904_010--Hb_000107_620 Hb_111985_050 Hb_111985_050 Hb_017904_010--Hb_111985_050 Hb_011571_010 Hb_011571_010 Hb_017904_010--Hb_011571_010 Hb_017904_010--Hb_009838_080 Hb_002044_080 Hb_002044_080 Hb_017904_010--Hb_002044_080 Hb_000428_050 Hb_000428_050 Hb_001776_140--Hb_000428_050 Hb_000120_790 Hb_000120_790 Hb_001776_140--Hb_000120_790 Hb_001675_180 Hb_001675_180 Hb_001776_140--Hb_001675_180 Hb_001545_120 Hb_001545_120 Hb_001776_140--Hb_001545_120 Hb_044728_010 Hb_044728_010 Hb_001776_140--Hb_044728_010 Hb_000243_030 Hb_000243_030 Hb_001776_140--Hb_000243_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3408 6.20035 7.1416 4.34297 18.5196 15.0276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1272 19.0032 17.4593 4.94727 13.2802

CAGE analysis