Hb_012807_060

Information

Type -
Description -
Location Contig12807: 56148-63027
Sequence    

Annotation

kegg
ID rcu:RCOM_0472860
description ATP-binding cassette transporter, putative (EC:3.6.3.19)
nr
ID AIU41645.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9ZUU9
description ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=2
trembl
ID A0A097P9Q7
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG3 PE=2 SV=1
Gene Ontology
ID GO:0005886
description abc transporter g family member 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012807_060 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_009581_050 0.0762244304 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
3 Hb_003052_120 0.0790572665 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
4 Hb_002551_090 0.0835836094 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
5 Hb_000579_180 0.0871506807 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
6 Hb_003430_020 0.0924253107 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
7 Hb_008226_120 0.102154428 - - ATP binding protein, putative [Ricinus communis]
8 Hb_010926_010 0.1061640698 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
9 Hb_003807_020 0.1064035643 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
10 Hb_000335_050 0.1065650183 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
11 Hb_001862_060 0.1081339685 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
12 Hb_003788_010 0.1083989567 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_022501_020 0.1084219109 - - AMP dependent CoA ligase, putative [Ricinus communis]
14 Hb_002007_140 0.1095417088 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
15 Hb_003453_030 0.1097978846 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
16 Hb_000407_080 0.1117257504 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
17 Hb_182021_010 0.1163471661 - - sucrose transporter 4 [Hevea brasiliensis]
18 Hb_134017_010 0.1165822709 - - kinase, putative [Ricinus communis]
19 Hb_004195_170 0.1184619495 - - ATP binding protein, putative [Ricinus communis]
20 Hb_000934_290 0.1212242409 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_012807_060 Hb_012807_060 Hb_009581_050 Hb_009581_050 Hb_012807_060--Hb_009581_050 Hb_003052_120 Hb_003052_120 Hb_012807_060--Hb_003052_120 Hb_002551_090 Hb_002551_090 Hb_012807_060--Hb_002551_090 Hb_000579_180 Hb_000579_180 Hb_012807_060--Hb_000579_180 Hb_003430_020 Hb_003430_020 Hb_012807_060--Hb_003430_020 Hb_008226_120 Hb_008226_120 Hb_012807_060--Hb_008226_120 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_002007_140 Hb_002007_140 Hb_009581_050--Hb_002007_140 Hb_003807_020 Hb_003807_020 Hb_009581_050--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_009581_050--Hb_000335_050 Hb_009581_050--Hb_003430_020 Hb_013914_020 Hb_013914_020 Hb_003052_120--Hb_013914_020 Hb_000586_100 Hb_000586_100 Hb_003052_120--Hb_000586_100 Hb_003052_120--Hb_009581_050 Hb_003052_120--Hb_000407_080 Hb_003052_120--Hb_002551_090 Hb_001158_080 Hb_001158_080 Hb_002551_090--Hb_001158_080 Hb_000934_290 Hb_000934_290 Hb_002551_090--Hb_000934_290 Hb_008140_060 Hb_008140_060 Hb_002551_090--Hb_008140_060 Hb_022501_020 Hb_022501_020 Hb_002551_090--Hb_022501_020 Hb_012753_200 Hb_012753_200 Hb_000579_180--Hb_012753_200 Hb_000579_180--Hb_003807_020 Hb_000085_230 Hb_000085_230 Hb_000579_180--Hb_000085_230 Hb_010926_010 Hb_010926_010 Hb_000579_180--Hb_010926_010 Hb_001894_040 Hb_001894_040 Hb_000579_180--Hb_001894_040 Hb_009581_040 Hb_009581_040 Hb_003430_020--Hb_009581_040 Hb_134017_010 Hb_134017_010 Hb_003430_020--Hb_134017_010 Hb_003439_090 Hb_003439_090 Hb_003430_020--Hb_003439_090 Hb_005183_200 Hb_005183_200 Hb_003430_020--Hb_005183_200 Hb_008226_120--Hb_001894_040 Hb_038777_010 Hb_038777_010 Hb_008226_120--Hb_038777_010 Hb_001862_060 Hb_001862_060 Hb_008226_120--Hb_001862_060 Hb_008406_020 Hb_008406_020 Hb_008226_120--Hb_008406_020 Hb_008226_120--Hb_009581_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0798654 13.5349 1.99327 7.50555 0.164914 0.440513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0692012 0.0272269 0.103851 17.1939 2.80811

CAGE analysis