Hb_012807_080

Information

Type -
Description -
Location Contig12807: 65454-69829
Sequence    

Annotation

kegg
ID cic:CICLE_v10028099mg
description hypothetical protein
nr
ID XP_006424495.1
description hypothetical protein CICLE_v10028099mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4SG08
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028099mg PE=4 SV=1
Gene Ontology
ID GO:0030176
description phosphatidate cytidylyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08680: 65596-65724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012807_080 0.0 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
2 Hb_006455_110 0.1147856955 - - bromodomain-containing protein, putative [Ricinus communis]
3 Hb_001477_010 0.1161546138 - - PREDICTED: dnaJ homolog subfamily B member 13-like [Cicer arietinum]
4 Hb_006455_090 0.1213595824 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
5 Hb_002046_040 0.1241035598 - - PREDICTED: topless-related protein 4 [Malus domestica]
6 Hb_003299_090 0.1289746451 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
7 Hb_003711_040 0.1293525873 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
8 Hb_000307_200 0.132174162 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
9 Hb_005965_010 0.1342711994 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
10 Hb_000200_040 0.1362971935 - - -
11 Hb_000295_100 0.1369291155 - - -
12 Hb_010298_010 0.1386020138 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
13 Hb_006455_080 0.1398918051 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
14 Hb_073339_010 0.1423972957 - - hypothetical protein 30 [Hevea brasiliensis]
15 Hb_144898_010 0.1431223292 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
16 Hb_000045_070 0.1455200468 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002811_120 0.1464486015 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
18 Hb_000891_040 0.1467664996 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
19 Hb_000017_340 0.1471399091 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
20 Hb_033642_020 0.1472090829 - - hypothetical protein JCGZ_19094 [Jatropha curcas]

Gene co-expression network

sample Hb_012807_080 Hb_012807_080 Hb_006455_110 Hb_006455_110 Hb_012807_080--Hb_006455_110 Hb_001477_010 Hb_001477_010 Hb_012807_080--Hb_001477_010 Hb_006455_090 Hb_006455_090 Hb_012807_080--Hb_006455_090 Hb_002046_040 Hb_002046_040 Hb_012807_080--Hb_002046_040 Hb_003299_090 Hb_003299_090 Hb_012807_080--Hb_003299_090 Hb_003711_040 Hb_003711_040 Hb_012807_080--Hb_003711_040 Hb_005965_010 Hb_005965_010 Hb_006455_110--Hb_005965_010 Hb_006455_110--Hb_006455_090 Hb_006455_080 Hb_006455_080 Hb_006455_110--Hb_006455_080 Hb_000295_100 Hb_000295_100 Hb_006455_110--Hb_000295_100 Hb_012286_050 Hb_012286_050 Hb_006455_110--Hb_012286_050 Hb_000256_270 Hb_000256_270 Hb_001477_010--Hb_000256_270 Hb_118301_010 Hb_118301_010 Hb_001477_010--Hb_118301_010 Hb_001252_170 Hb_001252_170 Hb_001477_010--Hb_001252_170 Hb_002290_060 Hb_002290_060 Hb_001477_010--Hb_002290_060 Hb_002955_010 Hb_002955_010 Hb_001477_010--Hb_002955_010 Hb_006455_090--Hb_006455_080 Hb_006455_090--Hb_003711_040 Hb_006455_090--Hb_012286_050 Hb_000307_200 Hb_000307_200 Hb_006455_090--Hb_000307_200 Hb_020902_010 Hb_020902_010 Hb_006455_090--Hb_020902_010 Hb_000041_220 Hb_000041_220 Hb_002046_040--Hb_000041_220 Hb_002046_040--Hb_000307_200 Hb_000284_210 Hb_000284_210 Hb_002046_040--Hb_000284_210 Hb_025012_010 Hb_025012_010 Hb_002046_040--Hb_025012_010 Hb_000017_340 Hb_000017_340 Hb_002046_040--Hb_000017_340 Hb_000316_030 Hb_000316_030 Hb_002046_040--Hb_000316_030 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_005914_090 Hb_005914_090 Hb_003299_090--Hb_005914_090 Hb_000347_150 Hb_000347_150 Hb_003299_090--Hb_000347_150 Hb_001307_140 Hb_001307_140 Hb_003299_090--Hb_001307_140 Hb_000270_020 Hb_000270_020 Hb_003299_090--Hb_000270_020 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020 Hb_083043_010 Hb_083043_010 Hb_003711_040--Hb_083043_010 Hb_002811_120 Hb_002811_120 Hb_003711_040--Hb_002811_120 Hb_004881_050 Hb_004881_050 Hb_003711_040--Hb_004881_050 Hb_001609_010 Hb_001609_010 Hb_003711_040--Hb_001609_010 Hb_005000_270 Hb_005000_270 Hb_003711_040--Hb_005000_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02827 0.497709 0.0665501 0.349264 1.40333 3.50508
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.780677 0.921026 0.424654 0.508913 0.157353

CAGE analysis