Hb_012807_120

Information

Type -
Description -
Location Contig12807: 120078-122408
Sequence    

Annotation

kegg
ID rcu:RCOM_0473020
description metal ion binding protein, putative
nr
ID XP_002523697.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9SCH8
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_0473020 PE=4 SV=1
Gene Ontology
ID GO:0030001
description metal ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08681: 119971-122306 , PASA_asmbl_08682: 119976-122306 , PASA_asmbl_08683: 121760-122306
cDNA
(Sanger)
(ID:Location)		 001_H01.ab1: 120208-121362 , 048_L07.ab1: 120299-121362

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012807_120 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_006478_070 0.0663815482 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
3 Hb_001140_080 0.0736379027 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
4 Hb_000365_350 0.0761142493 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
5 Hb_000320_440 0.0785677211 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
6 Hb_000088_180 0.0890009916 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
7 Hb_000573_040 0.0938615502 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
8 Hb_003777_220 0.0939310959 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
9 Hb_000282_150 0.0963792733 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
10 Hb_003506_040 0.0972942016 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
11 Hb_005028_010 0.0978621246 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
12 Hb_174865_050 0.0986689661 - - PREDICTED: neuroguidin [Jatropha curcas]
13 Hb_000173_370 0.0994363424 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1 [Jatropha curcas]
14 Hb_002025_140 0.0999456209 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
15 Hb_001846_080 0.1011684678 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
16 Hb_000172_530 0.1012367081 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
17 Hb_001776_080 0.1018948072 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
18 Hb_001195_030 0.1020078711 - - auxilin, putative [Ricinus communis]
19 Hb_004032_460 0.1021253429 - - -
20 Hb_002837_070 0.1055704636 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012807_120 Hb_012807_120 Hb_006478_070 Hb_006478_070 Hb_012807_120--Hb_006478_070 Hb_001140_080 Hb_001140_080 Hb_012807_120--Hb_001140_080 Hb_000365_350 Hb_000365_350 Hb_012807_120--Hb_000365_350 Hb_000320_440 Hb_000320_440 Hb_012807_120--Hb_000320_440 Hb_000088_180 Hb_000088_180 Hb_012807_120--Hb_000088_180 Hb_000573_040 Hb_000573_040 Hb_012807_120--Hb_000573_040 Hb_003506_040 Hb_003506_040 Hb_006478_070--Hb_003506_040 Hb_006478_070--Hb_001140_080 Hb_006478_070--Hb_000320_440 Hb_000172_530 Hb_000172_530 Hb_006478_070--Hb_000172_530 Hb_001846_080 Hb_001846_080 Hb_006478_070--Hb_001846_080 Hb_000282_150 Hb_000282_150 Hb_001140_080--Hb_000282_150 Hb_000270_450 Hb_000270_450 Hb_001140_080--Hb_000270_450 Hb_001140_080--Hb_003506_040 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010 Hb_000050_120 Hb_000050_120 Hb_000365_350--Hb_000050_120 Hb_000365_350--Hb_000088_180 Hb_004032_460 Hb_004032_460 Hb_000365_350--Hb_004032_460 Hb_098315_100 Hb_098315_100 Hb_000365_350--Hb_098315_100 Hb_000365_350--Hb_006478_070 Hb_001776_080 Hb_001776_080 Hb_000320_440--Hb_001776_080 Hb_000320_440--Hb_000088_180 Hb_000320_440--Hb_000172_530 Hb_000260_700 Hb_000260_700 Hb_000320_440--Hb_000260_700 Hb_009615_110 Hb_009615_110 Hb_000320_440--Hb_009615_110 Hb_003777_220 Hb_003777_220 Hb_000320_440--Hb_003777_220 Hb_000088_180--Hb_004032_460 Hb_000088_180--Hb_000260_700 Hb_000088_180--Hb_001776_080 Hb_000173_370 Hb_000173_370 Hb_000088_180--Hb_000173_370 Hb_002025_140 Hb_002025_140 Hb_000573_040--Hb_002025_140 Hb_000684_180 Hb_000684_180 Hb_000573_040--Hb_000684_180 Hb_000134_360 Hb_000134_360 Hb_000573_040--Hb_000134_360 Hb_000212_280 Hb_000212_280 Hb_000573_040--Hb_000212_280 Hb_000573_040--Hb_005028_010 Hb_004531_090 Hb_004531_090 Hb_000573_040--Hb_004531_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5476.06 634.587 360.362 221.558 4825.71 4977.87
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2580.64 788.538 1164.84 623.062 236.298

CAGE analysis