Hb_012807_140

Information

Type transcription factor
Description TF Family: MYB
Location Contig12807: 145256-146790
Sequence    

Annotation

kegg
ID pop:POPTR_0009s01270g
description POPTRDRAFT_558303; hypothetical protein
nr
ID XP_002314299.1
description hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
swissprot
ID Q9M2Y9
description Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1
trembl
ID B9HQM8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s01270g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor rax2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012807_140 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
2 Hb_004712_020 0.0457184265 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
3 Hb_001105_200 0.0865379069 - - catalytic, putative [Ricinus communis]
4 Hb_002870_010 0.0939125197 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
5 Hb_002122_040 0.0999117897 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_000487_240 0.1026568298 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
7 Hb_009642_010 0.1088668259 - - Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_010926_030 0.1115583178 - - hypothetical protein CISIN_1g037967mg, partial [Citrus sinensis]
9 Hb_008140_060 0.1120474202 - - Cytochrome P450, putative [Theobroma cacao]
10 Hb_001158_080 0.116523801 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
11 Hb_000934_290 0.1175420883 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004881_060 0.1190603657 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
13 Hb_088916_010 0.1201408357 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
14 Hb_001863_080 0.1207278107 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
15 Hb_000081_020 0.12200281 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
16 Hb_001104_210 0.1235616504 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
17 Hb_009510_060 0.1242483189 - - -
18 Hb_000205_210 0.125508788 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
19 Hb_001377_010 0.1261215935 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
20 Hb_008692_020 0.1269977218 - - -

Gene co-expression network

sample Hb_012807_140 Hb_012807_140 Hb_004712_020 Hb_004712_020 Hb_012807_140--Hb_004712_020 Hb_001105_200 Hb_001105_200 Hb_012807_140--Hb_001105_200 Hb_002870_010 Hb_002870_010 Hb_012807_140--Hb_002870_010 Hb_002122_040 Hb_002122_040 Hb_012807_140--Hb_002122_040 Hb_000487_240 Hb_000487_240 Hb_012807_140--Hb_000487_240 Hb_009642_010 Hb_009642_010 Hb_012807_140--Hb_009642_010 Hb_004712_020--Hb_001105_200 Hb_010926_030 Hb_010926_030 Hb_004712_020--Hb_010926_030 Hb_004712_020--Hb_002122_040 Hb_008692_020 Hb_008692_020 Hb_004712_020--Hb_008692_020 Hb_004712_020--Hb_002870_010 Hb_001105_200--Hb_009642_010 Hb_001105_200--Hb_002122_040 Hb_000205_210 Hb_000205_210 Hb_001105_200--Hb_000205_210 Hb_004881_060 Hb_004881_060 Hb_001105_200--Hb_004881_060 Hb_001377_010 Hb_001377_010 Hb_002870_010--Hb_001377_010 Hb_001514_070 Hb_001514_070 Hb_002870_010--Hb_001514_070 Hb_001136_030 Hb_001136_030 Hb_002870_010--Hb_001136_030 Hb_001104_210 Hb_001104_210 Hb_002870_010--Hb_001104_210 Hb_003090_180 Hb_003090_180 Hb_002870_010--Hb_003090_180 Hb_002122_040--Hb_009642_010 Hb_002122_040--Hb_008692_020 Hb_002122_040--Hb_002870_010 Hb_000276_030 Hb_000276_030 Hb_000487_240--Hb_000276_030 Hb_000487_240--Hb_003090_180 Hb_000487_240--Hb_001104_210 Hb_002182_050 Hb_002182_050 Hb_000487_240--Hb_002182_050 Hb_000025_740 Hb_000025_740 Hb_000487_240--Hb_000025_740 Hb_001158_080 Hb_001158_080 Hb_009642_010--Hb_001158_080 Hb_009642_010--Hb_004712_020 Hb_088916_010 Hb_088916_010 Hb_009642_010--Hb_088916_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.666622 0.0657965 0.662453 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.19523 0.315421

CAGE analysis