Hb_012812_010

Information

Type -
Description -
Location Contig12812: 7610-15728
Sequence    

Annotation

kegg
ID pmum:103344440
description probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840
nr
ID XP_010112408.1
description putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
swissprot
ID Q9FXF2
description Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1
trembl
ID W9SAP9
description Putative leucine-rich repeat receptor-like serine/threonine-protein kinase OS=Morus notabilis GN=L484_003511 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable leucine-rich repeat receptor-like serine threonine-protein kinase at3g14840

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08690: 9492-10045
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012812_010 0.0 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
2 Hb_001230_020 0.1128455394 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
3 Hb_001230_030 0.1141105962 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 isoform X2 [Populus euphratica]
4 Hb_002400_160 0.1212221865 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
5 Hb_019863_060 0.1477607015 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
6 Hb_002154_020 0.1512643317 - - protein with unknown function [Ricinus communis]
7 Hb_000120_160 0.151365692 - - unnamed protein product [Vitis vinifera]
8 Hb_072276_010 0.1578544492 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
9 Hb_007850_010 0.1609126133 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
10 Hb_000126_070 0.1630123135 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
11 Hb_002482_030 0.165584318 transcription factor TF Family: PLATZ unknown [Medicago truncatula]
12 Hb_001488_040 0.1664902592 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
13 Hb_005183_140 0.1688006479 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
14 Hb_000473_150 0.1693090764 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
15 Hb_001242_190 0.1724199384 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
16 Hb_002249_050 0.1728739636 - - Auxin response factor, putative [Ricinus communis]
17 Hb_001195_730 0.175038399 - - PREDICTED: protein LYK5-like [Jatropha curcas]
18 Hb_007007_070 0.1783606069 transcription factor TF Family: TCP hypothetical protein MIMGU_mgv1a022855mg, partial [Erythranthe guttata]
19 Hb_002477_120 0.1800768106 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
20 Hb_001951_100 0.1801528413 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]

Gene co-expression network

sample Hb_012812_010 Hb_012812_010 Hb_001230_020 Hb_001230_020 Hb_012812_010--Hb_001230_020 Hb_001230_030 Hb_001230_030 Hb_012812_010--Hb_001230_030 Hb_002400_160 Hb_002400_160 Hb_012812_010--Hb_002400_160 Hb_019863_060 Hb_019863_060 Hb_012812_010--Hb_019863_060 Hb_002154_020 Hb_002154_020 Hb_012812_010--Hb_002154_020 Hb_000120_160 Hb_000120_160 Hb_012812_010--Hb_000120_160 Hb_000126_040 Hb_000126_040 Hb_001230_020--Hb_000126_040 Hb_072276_010 Hb_072276_010 Hb_001230_020--Hb_072276_010 Hb_126103_010 Hb_126103_010 Hb_001230_020--Hb_126103_010 Hb_000032_020 Hb_000032_020 Hb_001230_020--Hb_000032_020 Hb_001195_730 Hb_001195_730 Hb_001230_020--Hb_001195_730 Hb_000340_290 Hb_000340_290 Hb_001230_030--Hb_000340_290 Hb_001230_030--Hb_002400_160 Hb_000684_050 Hb_000684_050 Hb_001230_030--Hb_000684_050 Hb_001488_040 Hb_001488_040 Hb_001230_030--Hb_001488_040 Hb_000331_510 Hb_000331_510 Hb_001230_030--Hb_000331_510 Hb_002249_050 Hb_002249_050 Hb_002400_160--Hb_002249_050 Hb_002400_160--Hb_002154_020 Hb_002400_160--Hb_001488_040 Hb_002897_050 Hb_002897_050 Hb_002400_160--Hb_002897_050 Hb_007313_070 Hb_007313_070 Hb_002400_160--Hb_007313_070 Hb_000126_070 Hb_000126_070 Hb_002400_160--Hb_000126_070 Hb_000473_150 Hb_000473_150 Hb_019863_060--Hb_000473_150 Hb_000059_130 Hb_000059_130 Hb_019863_060--Hb_000059_130 Hb_019863_060--Hb_002154_020 Hb_002804_010 Hb_002804_010 Hb_019863_060--Hb_002804_010 Hb_002387_040 Hb_002387_040 Hb_019863_060--Hb_002387_040 Hb_002248_120 Hb_002248_120 Hb_019863_060--Hb_002248_120 Hb_002154_020--Hb_002387_040 Hb_002154_020--Hb_002249_050 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_004032_310 Hb_004032_310 Hb_002154_020--Hb_004032_310 Hb_000805_230 Hb_000805_230 Hb_000120_160--Hb_000805_230 Hb_002876_250 Hb_002876_250 Hb_000120_160--Hb_002876_250 Hb_000116_210 Hb_000116_210 Hb_000120_160--Hb_000116_210 Hb_005496_180 Hb_005496_180 Hb_000120_160--Hb_005496_180 Hb_001288_070 Hb_001288_070 Hb_000120_160--Hb_001288_070 Hb_000120_160--Hb_002154_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.264577 3.30118 0.803057 0.469076 0.1013 0.309504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.445605 0.369064 0.314638 0.96206 1.55831

CAGE analysis