Hb_012867_010

Information

Type -
Description -
Location Contig12867: 18295-22435
Sequence    

Annotation

kegg
ID tcc:TCM_035451
description Vacuolar protein sorting 45
nr
ID XP_007019403.1
description Vacuolar protein sorting 45 [Theobroma cacao]
swissprot
ID O49048
description Vacuolar protein sorting-associated protein 45 homolog OS=Arabidopsis thaliana GN=VPS45 PE=1 SV=2
trembl
ID A0A061FI98
description Vacuolar protein sorting 45 OS=Theobroma cacao GN=TCM_035451 PE=4 SV=1
Gene Ontology
ID GO:0043231
description vacuolar protein sorting-associated protein 45 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012867_010 0.0 - - Vacuolar protein sorting 45 [Theobroma cacao]
2 Hb_136765_010 0.1606883646 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
3 Hb_002141_020 0.1698026535 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
4 Hb_089889_020 0.1727416571 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
5 Hb_107847_010 0.185443191 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
6 Hb_068922_010 0.1880539536 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
7 Hb_125861_010 0.19609745 - - hypothetical protein RCOM_0703970 [Ricinus communis]
8 Hb_009693_030 0.1987323921 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000331_500 0.1988412345 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000996_180 0.2009660072 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
11 Hb_001276_020 0.2035234272 - - hypothetical protein VITISV_003263 [Vitis vinifera]
12 Hb_004662_010 0.2091856855 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
13 Hb_004241_040 0.2100481073 - - -
14 Hb_000018_170 0.212028121 - - PREDICTED: bark storage protein A-like [Jatropha curcas]
15 Hb_000789_100 0.217212649 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
16 Hb_000062_380 0.2189260025 - - PREDICTED: putative F-box protein At1g67623 [Jatropha curcas]
17 Hb_175612_010 0.2206488126 transcription factor TF Family: MBF1 orf [Ricinus communis]
18 Hb_003849_080 0.2242537317 - - PREDICTED: sufE-like protein 2, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_000661_160 0.2257096718 - - hexokinase [Manihot esculenta]
20 Hb_017259_010 0.2274250185 - - -

Gene co-expression network

sample Hb_012867_010 Hb_012867_010 Hb_136765_010 Hb_136765_010 Hb_012867_010--Hb_136765_010 Hb_002141_020 Hb_002141_020 Hb_012867_010--Hb_002141_020 Hb_089889_020 Hb_089889_020 Hb_012867_010--Hb_089889_020 Hb_107847_010 Hb_107847_010 Hb_012867_010--Hb_107847_010 Hb_068922_010 Hb_068922_010 Hb_012867_010--Hb_068922_010 Hb_125861_010 Hb_125861_010 Hb_012867_010--Hb_125861_010 Hb_000331_500 Hb_000331_500 Hb_136765_010--Hb_000331_500 Hb_136765_010--Hb_068922_010 Hb_136765_010--Hb_002141_020 Hb_010068_100 Hb_010068_100 Hb_136765_010--Hb_010068_100 Hb_004241_040 Hb_004241_040 Hb_136765_010--Hb_004241_040 Hb_002141_020--Hb_000331_500 Hb_004662_010 Hb_004662_010 Hb_002141_020--Hb_004662_010 Hb_004109_060 Hb_004109_060 Hb_002141_020--Hb_004109_060 Hb_002141_020--Hb_004241_040 Hb_009838_130 Hb_009838_130 Hb_089889_020--Hb_009838_130 Hb_007123_070 Hb_007123_070 Hb_089889_020--Hb_007123_070 Hb_000996_180 Hb_000996_180 Hb_089889_020--Hb_000996_180 Hb_001910_020 Hb_001910_020 Hb_089889_020--Hb_001910_020 Hb_089889_020--Hb_107847_010 Hb_017259_010 Hb_017259_010 Hb_089889_020--Hb_017259_010 Hb_107847_010--Hb_000996_180 Hb_107847_010--Hb_009838_130 Hb_000504_170 Hb_000504_170 Hb_107847_010--Hb_000504_170 Hb_009693_030 Hb_009693_030 Hb_107847_010--Hb_009693_030 Hb_000264_060 Hb_000264_060 Hb_107847_010--Hb_000264_060 Hb_068922_010--Hb_010068_100 Hb_012120_030 Hb_012120_030 Hb_068922_010--Hb_012120_030 Hb_000253_030 Hb_000253_030 Hb_068922_010--Hb_000253_030 Hb_005271_020 Hb_005271_020 Hb_068922_010--Hb_005271_020 Hb_140595_010 Hb_140595_010 Hb_125861_010--Hb_140595_010 Hb_101020_010 Hb_101020_010 Hb_125861_010--Hb_101020_010 Hb_000580_130 Hb_000580_130 Hb_125861_010--Hb_000580_130 Hb_125861_010--Hb_107847_010 Hb_125861_010--Hb_089889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.82585 1.16125 2.654 2.20597 6.92958 7.32325
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60072 2.37561 0 0 0

CAGE analysis