Hb_012979_020

Information

Type -
Description -
Location Contig12979: 22932-34797
Sequence    

Annotation

kegg
ID sly:101249477
description neutral alpha-glucosidase C
nr
ID XP_004246000.1
description PREDICTED: neutral alpha-glucosidase C [Solanum lycopersicum]
swissprot
ID -
description -
trembl
ID K4CMS0
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g075530.2 PE=3 SV=1
Gene Ontology
ID GO:0004553
description neutral alpha-glucosidase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08860: 21742-22187
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012979_020 0.0 - - PREDICTED: neutral alpha-glucosidase C [Solanum lycopersicum]
2 Hb_165071_030 0.2014990053 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_003861_020 0.2311292494 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
4 Hb_001014_120 0.2346753503 transcription factor TF Family: ERF ethylene-responsive transcription factor ERF113 [Jatropha curcas]
5 Hb_002289_090 0.236981235 - - cytoplasmic tRNA 2-thiolation protein 2-like [Scleropages formosus]
6 Hb_101808_010 0.2388888371 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
7 Hb_005725_090 0.2469113544 - - PREDICTED: phytosulfokines 3 [Cicer arietinum]
8 Hb_005052_020 0.2515403511 - - -
9 Hb_010480_030 0.2530418433 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
10 Hb_099387_010 0.2535946289 - - -
11 Hb_001006_260 0.25591263 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
12 Hb_001005_070 0.2564783313 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
13 Hb_003226_160 0.2591040266 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
14 Hb_001911_060 0.2599876073 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
15 Hb_000907_170 0.2624882912 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
16 Hb_031718_010 0.2630585854 - - -
17 Hb_000362_120 0.2647535755 - - glutamate receptor 2 plant, putative [Ricinus communis]
18 Hb_000367_190 0.2664628017 - - hypothetical protein RCOM_1470550 [Ricinus communis]
19 Hb_006846_110 0.2666414066 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
20 Hb_000189_140 0.2675407449 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012979_020 Hb_012979_020 Hb_165071_030 Hb_165071_030 Hb_012979_020--Hb_165071_030 Hb_003861_020 Hb_003861_020 Hb_012979_020--Hb_003861_020 Hb_001014_120 Hb_001014_120 Hb_012979_020--Hb_001014_120 Hb_002289_090 Hb_002289_090 Hb_012979_020--Hb_002289_090 Hb_101808_010 Hb_101808_010 Hb_012979_020--Hb_101808_010 Hb_005725_090 Hb_005725_090 Hb_012979_020--Hb_005725_090 Hb_010513_010 Hb_010513_010 Hb_165071_030--Hb_010513_010 Hb_000252_130 Hb_000252_130 Hb_165071_030--Hb_000252_130 Hb_000116_420 Hb_000116_420 Hb_165071_030--Hb_000116_420 Hb_011484_010 Hb_011484_010 Hb_165071_030--Hb_011484_010 Hb_002820_010 Hb_002820_010 Hb_165071_030--Hb_002820_010 Hb_001703_120 Hb_001703_120 Hb_003861_020--Hb_001703_120 Hb_000362_120 Hb_000362_120 Hb_003861_020--Hb_000362_120 Hb_000136_040 Hb_000136_040 Hb_003861_020--Hb_000136_040 Hb_010480_030 Hb_010480_030 Hb_003861_020--Hb_010480_030 Hb_012180_020 Hb_012180_020 Hb_003861_020--Hb_012180_020 Hb_001767_090 Hb_001767_090 Hb_001014_120--Hb_001767_090 Hb_011056_020 Hb_011056_020 Hb_001014_120--Hb_011056_020 Hb_001005_070 Hb_001005_070 Hb_001014_120--Hb_001005_070 Hb_001184_110 Hb_001184_110 Hb_001014_120--Hb_001184_110 Hb_002391_230 Hb_002391_230 Hb_001014_120--Hb_002391_230 Hb_112399_010 Hb_112399_010 Hb_001014_120--Hb_112399_010 Hb_001911_060 Hb_001911_060 Hb_002289_090--Hb_001911_060 Hb_000931_010 Hb_000931_010 Hb_002289_090--Hb_000931_010 Hb_001080_220 Hb_001080_220 Hb_002289_090--Hb_001080_220 Hb_132998_010 Hb_132998_010 Hb_002289_090--Hb_132998_010 Hb_000907_170 Hb_000907_170 Hb_002289_090--Hb_000907_170 Hb_003906_090 Hb_003906_090 Hb_101808_010--Hb_003906_090 Hb_170698_010 Hb_170698_010 Hb_101808_010--Hb_170698_010 Hb_001189_050 Hb_001189_050 Hb_101808_010--Hb_001189_050 Hb_001294_010 Hb_001294_010 Hb_101808_010--Hb_001294_010 Hb_001898_070 Hb_001898_070 Hb_101808_010--Hb_001898_070 Hb_001357_010 Hb_001357_010 Hb_101808_010--Hb_001357_010 Hb_001517_020 Hb_001517_020 Hb_005725_090--Hb_001517_020 Hb_000243_140 Hb_000243_140 Hb_005725_090--Hb_000243_140 Hb_000723_160 Hb_000723_160 Hb_005725_090--Hb_000723_160 Hb_003226_160 Hb_003226_160 Hb_005725_090--Hb_003226_160 Hb_005333_150 Hb_005333_150 Hb_005725_090--Hb_005333_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.438132 0.118853 0 0 0.0337614 0.593721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.232543 0.609402 0.654674 0.619057 0.241953

CAGE analysis