Hb_013057_020

Information

Type -
Description -
Location Contig13057: 22741-23877
Sequence    

Annotation

kegg
ID sot:102594265
description uncharacterized LOC102594265
nr
ID XP_012088084.1
description PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A067JNE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25609 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09080: 22751-23288 , PASA_asmbl_09081: 23467-23636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013057_020 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
2 Hb_000836_280 0.0869248545 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
3 Hb_006441_020 0.0922682542 - - PREDICTED: cadmium/zinc-transporting ATPase HMA3-like isoform X2 [Populus euphratica]
4 Hb_000983_050 0.097127653 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_023344_150 0.1021020057 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
6 Hb_002781_030 0.1028039554 - - protein binding protein, putative [Ricinus communis]
7 Hb_004480_020 0.1032322852 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
8 Hb_000625_090 0.1059913858 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000215_320 0.108871229 - - phosphofructokinase [Hevea brasiliensis]
10 Hb_000359_090 0.1096124055 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
11 Hb_017387_010 0.110725936 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
12 Hb_002915_060 0.1120197876 - - PREDICTED: serine/threonine-protein kinase CTR1-like [Jatropha curcas]
13 Hb_001157_200 0.1170705075 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
14 Hb_000984_310 0.1197136877 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
15 Hb_003688_180 0.120715711 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
16 Hb_001481_150 0.1224217906 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
17 Hb_006452_120 0.1224958246 - - PREDICTED: protein FAM188A [Jatropha curcas]
18 Hb_006573_210 0.1241629896 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
19 Hb_000836_550 0.124298503 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
20 Hb_000258_240 0.1244209884 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]

Gene co-expression network

sample Hb_013057_020 Hb_013057_020 Hb_000836_280 Hb_000836_280 Hb_013057_020--Hb_000836_280 Hb_006441_020 Hb_006441_020 Hb_013057_020--Hb_006441_020 Hb_000983_050 Hb_000983_050 Hb_013057_020--Hb_000983_050 Hb_023344_150 Hb_023344_150 Hb_013057_020--Hb_023344_150 Hb_002781_030 Hb_002781_030 Hb_013057_020--Hb_002781_030 Hb_004480_020 Hb_004480_020 Hb_013057_020--Hb_004480_020 Hb_000140_350 Hb_000140_350 Hb_000836_280--Hb_000140_350 Hb_000208_280 Hb_000208_280 Hb_000836_280--Hb_000208_280 Hb_000836_280--Hb_023344_150 Hb_012114_100 Hb_012114_100 Hb_000836_280--Hb_012114_100 Hb_000146_040 Hb_000146_040 Hb_000836_280--Hb_000146_040 Hb_006922_050 Hb_006922_050 Hb_006441_020--Hb_006922_050 Hb_005188_030 Hb_005188_030 Hb_006441_020--Hb_005188_030 Hb_002307_270 Hb_002307_270 Hb_006441_020--Hb_002307_270 Hb_017387_010 Hb_017387_010 Hb_006441_020--Hb_017387_010 Hb_002915_060 Hb_002915_060 Hb_006441_020--Hb_002915_060 Hb_004607_090 Hb_004607_090 Hb_000983_050--Hb_004607_090 Hb_000983_050--Hb_023344_150 Hb_011360_050 Hb_011360_050 Hb_000983_050--Hb_011360_050 Hb_002982_020 Hb_002982_020 Hb_000983_050--Hb_002982_020 Hb_000367_090 Hb_000367_090 Hb_000983_050--Hb_000367_090 Hb_000046_170 Hb_000046_170 Hb_000983_050--Hb_000046_170 Hb_000731_200 Hb_000731_200 Hb_023344_150--Hb_000731_200 Hb_001328_080 Hb_001328_080 Hb_023344_150--Hb_001328_080 Hb_000023_300 Hb_000023_300 Hb_023344_150--Hb_000023_300 Hb_008748_030 Hb_008748_030 Hb_023344_150--Hb_008748_030 Hb_000227_160 Hb_000227_160 Hb_023344_150--Hb_000227_160 Hb_000258_240 Hb_000258_240 Hb_002781_030--Hb_000258_240 Hb_000928_190 Hb_000928_190 Hb_002781_030--Hb_000928_190 Hb_000359_090 Hb_000359_090 Hb_002781_030--Hb_000359_090 Hb_148130_020 Hb_148130_020 Hb_002781_030--Hb_148130_020 Hb_001481_150 Hb_001481_150 Hb_002781_030--Hb_001481_150 Hb_004480_020--Hb_001481_150 Hb_007286_020 Hb_007286_020 Hb_004480_020--Hb_007286_020 Hb_007137_050 Hb_007137_050 Hb_004480_020--Hb_007137_050 Hb_004480_020--Hb_000023_300 Hb_000085_450 Hb_000085_450 Hb_004480_020--Hb_000085_450 Hb_001097_040 Hb_001097_040 Hb_004480_020--Hb_001097_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7518 17.8239 5.80474 28.6922 5.38489 8.17046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.17743 11.1006 8.46381 13.3133 8.85156

CAGE analysis