Hb_013080_010

Information

Type -
Description -
Location Contig13080: 399-1061
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061G986
description Uncharacterized protein OS=Theobroma cacao GN=TCM_028061 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013080_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_024411_010 0.1769259869 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_053079_010 0.2186455335 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_027010_030 0.2785930682 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_033594_050 0.2867284453 - - PREDICTED: cyclin-D4-1-like [Jatropha curcas]
6 Hb_005016_110 0.2887411703 - - -
7 Hb_001206_010 0.2981392179 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
8 Hb_004195_220 0.3019617327 - - hypothetical protein PRUPE_ppa005288mg [Prunus persica]
9 Hb_132384_010 0.3150181 - - hypothetical protein VITISV_018559 [Vitis vinifera]
10 Hb_000856_320 0.3171004952 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
11 Hb_005466_010 0.317303702 - - ATPase subunit 6, partial (mitochondrion) [Celastrus scandens]
12 Hb_017075_020 0.3192863242 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
13 Hb_130579_050 0.3220273503 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
14 Hb_003406_030 0.3236663328 - - PREDICTED: uncharacterized protein LOC104774100 [Camelina sativa]
15 Hb_141990_020 0.3273073266 - - RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement protein; Short=MP; Contains: RecName: Full=Capsid protein; Short=CP; Contains: RecName: Full=Aspartic protease; Short=PR; Contains: RecName: Full=Reverse transcriptase; Short=RT [Petunia vein clearing virus isolate Hohn]
16 Hb_045785_010 0.3322747251 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_027337_050 0.3328016015 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_067345_020 0.3330805635 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
19 Hb_002025_240 0.3338292688 - - -
20 Hb_001229_030 0.3363564032 - - PREDICTED: uncharacterized protein LOC104783713 [Camelina sativa]

Gene co-expression network

sample Hb_013080_010 Hb_013080_010 Hb_024411_010 Hb_024411_010 Hb_013080_010--Hb_024411_010 Hb_053079_010 Hb_053079_010 Hb_013080_010--Hb_053079_010 Hb_027010_030 Hb_027010_030 Hb_013080_010--Hb_027010_030 Hb_033594_050 Hb_033594_050 Hb_013080_010--Hb_033594_050 Hb_005016_110 Hb_005016_110 Hb_013080_010--Hb_005016_110 Hb_001206_010 Hb_001206_010 Hb_013080_010--Hb_001206_010 Hb_024411_010--Hb_053079_010 Hb_086607_010 Hb_086607_010 Hb_024411_010--Hb_086607_010 Hb_002687_070 Hb_002687_070 Hb_024411_010--Hb_002687_070 Hb_000518_040 Hb_000518_040 Hb_024411_010--Hb_000518_040 Hb_171685_020 Hb_171685_020 Hb_024411_010--Hb_171685_020 Hb_006040_050 Hb_006040_050 Hb_053079_010--Hb_006040_050 Hb_005466_010 Hb_005466_010 Hb_053079_010--Hb_005466_010 Hb_053079_010--Hb_027010_030 Hb_151320_010 Hb_151320_010 Hb_053079_010--Hb_151320_010 Hb_032718_010 Hb_032718_010 Hb_027010_030--Hb_032718_010 Hb_041813_010 Hb_041813_010 Hb_027010_030--Hb_041813_010 Hb_026698_030 Hb_026698_030 Hb_027010_030--Hb_026698_030 Hb_067345_020 Hb_067345_020 Hb_027010_030--Hb_067345_020 Hb_017098_060 Hb_017098_060 Hb_027010_030--Hb_017098_060 Hb_000349_160 Hb_000349_160 Hb_033594_050--Hb_000349_160 Hb_033594_050--Hb_005016_110 Hb_002585_060 Hb_002585_060 Hb_033594_050--Hb_002585_060 Hb_004063_010 Hb_004063_010 Hb_033594_050--Hb_004063_010 Hb_000028_270 Hb_000028_270 Hb_033594_050--Hb_000028_270 Hb_058095_030 Hb_058095_030 Hb_033594_050--Hb_058095_030 Hb_002729_020 Hb_002729_020 Hb_005016_110--Hb_002729_020 Hb_005016_110--Hb_002585_060 Hb_002815_040 Hb_002815_040 Hb_005016_110--Hb_002815_040 Hb_005016_110--Hb_058095_030 Hb_048476_070 Hb_048476_070 Hb_005016_110--Hb_048476_070 Hb_014879_010 Hb_014879_010 Hb_001206_010--Hb_014879_010 Hb_000172_130 Hb_000172_130 Hb_001206_010--Hb_000172_130 Hb_001206_010--Hb_024411_010 Hb_057451_040 Hb_057451_040 Hb_001206_010--Hb_057451_040 Hb_038044_020 Hb_038044_020 Hb_001206_010--Hb_038044_020 Hb_001062_020 Hb_001062_020 Hb_001206_010--Hb_001062_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.229614 0.0303863 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.121699 0.0280004 0.269632

CAGE analysis