Hb_013124_010

Information

Type -
Description -
Location Contig13124: 451-3112
Sequence    

Annotation

kegg
ID pop:POPTR_0002s15840g
description POPTRDRAFT_644424; short-chain dehydrogenase/reductase family protein
nr
ID XP_012083439.1
description PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
swissprot
ID Q9M2E2
description (+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1
trembl
ID A0A067JXP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14433 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013124_010 0.0 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
2 Hb_184770_010 0.2085585673 - - -
3 Hb_002783_020 0.2547632957 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
4 Hb_005527_080 0.2563255652 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
5 Hb_005535_060 0.2622660266 - - -
6 Hb_002192_070 0.2667566327 - - -
7 Hb_012384_050 0.2671937688 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
8 Hb_000608_040 0.2680882366 - - -
9 Hb_000988_060 0.2704932196 - - hypothetical protein JCGZ_21307 [Jatropha curcas]
10 Hb_002897_040 0.2707089997 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
11 Hb_000815_100 0.273444748 - - -
12 Hb_063409_020 0.2747205607 - - Calcium-binding protein, putative [Ricinus communis]
13 Hb_000976_080 0.2766233291 - - hypothetical protein VITISV_034376 [Vitis vinifera]
14 Hb_005695_060 0.2841671677 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
15 Hb_149838_010 0.284467387 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
16 Hb_012184_050 0.2851554685 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
17 Hb_008406_130 0.2856301524 - - -
18 Hb_002843_090 0.2861130252 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
19 Hb_001944_030 0.2887125791 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
20 Hb_001001_020 0.2902973385 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]

Gene co-expression network

sample Hb_013124_010 Hb_013124_010 Hb_184770_010 Hb_184770_010 Hb_013124_010--Hb_184770_010 Hb_002783_020 Hb_002783_020 Hb_013124_010--Hb_002783_020 Hb_005527_080 Hb_005527_080 Hb_013124_010--Hb_005527_080 Hb_005535_060 Hb_005535_060 Hb_013124_010--Hb_005535_060 Hb_002192_070 Hb_002192_070 Hb_013124_010--Hb_002192_070 Hb_012384_050 Hb_012384_050 Hb_013124_010--Hb_012384_050 Hb_001001_020 Hb_001001_020 Hb_184770_010--Hb_001001_020 Hb_005695_060 Hb_005695_060 Hb_184770_010--Hb_005695_060 Hb_022132_010 Hb_022132_010 Hb_184770_010--Hb_022132_010 Hb_019936_010 Hb_019936_010 Hb_184770_010--Hb_019936_010 Hb_000815_100 Hb_000815_100 Hb_184770_010--Hb_000815_100 Hb_149838_010 Hb_149838_010 Hb_002783_020--Hb_149838_010 Hb_000260_140 Hb_000260_140 Hb_002783_020--Hb_000260_140 Hb_027402_090 Hb_027402_090 Hb_002783_020--Hb_027402_090 Hb_002708_020 Hb_002708_020 Hb_002783_020--Hb_002708_020 Hb_002686_330 Hb_002686_330 Hb_002783_020--Hb_002686_330 Hb_004176_060 Hb_004176_060 Hb_002783_020--Hb_004176_060 Hb_005527_080--Hb_000260_140 Hb_005527_080--Hb_149838_010 Hb_005527_080--Hb_002783_020 Hb_005527_080--Hb_002708_020 Hb_054436_010 Hb_054436_010 Hb_005527_080--Hb_054436_010 Hb_005527_080--Hb_027402_090 Hb_000608_040 Hb_000608_040 Hb_005535_060--Hb_000608_040 Hb_001703_130 Hb_001703_130 Hb_005535_060--Hb_001703_130 Hb_002805_170 Hb_002805_170 Hb_005535_060--Hb_002805_170 Hb_012184_050 Hb_012184_050 Hb_005535_060--Hb_012184_050 Hb_001473_190 Hb_001473_190 Hb_005535_060--Hb_001473_190 Hb_063409_020 Hb_063409_020 Hb_005535_060--Hb_063409_020 Hb_000849_150 Hb_000849_150 Hb_002192_070--Hb_000849_150 Hb_003813_200 Hb_003813_200 Hb_002192_070--Hb_003813_200 Hb_000544_040 Hb_000544_040 Hb_002192_070--Hb_000544_040 Hb_002192_070--Hb_000815_100 Hb_000025_750 Hb_000025_750 Hb_002192_070--Hb_000025_750 Hb_002897_040 Hb_002897_040 Hb_002192_070--Hb_002897_040 Hb_073212_010 Hb_073212_010 Hb_012384_050--Hb_073212_010 Hb_000365_260 Hb_000365_260 Hb_012384_050--Hb_000365_260 Hb_006615_100 Hb_006615_100 Hb_012384_050--Hb_006615_100 Hb_003064_030 Hb_003064_030 Hb_012384_050--Hb_003064_030 Hb_000815_140 Hb_000815_140 Hb_012384_050--Hb_000815_140 Hb_087221_010 Hb_087221_010 Hb_012384_050--Hb_087221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22789 0.0514065 0.472789 0.0288177 0.802169 0.221658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0705277 0.0554533 0 0.112359 0.110939

CAGE analysis