Hb_013241_010

Information

Type -
Description -
Location Contig13241: 23711-28257
Sequence    

Annotation

kegg
ID rcu:RCOM_1748460
description hypothetical protein
nr
ID XP_012092526.1
description PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9UUH7
description GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1
trembl
ID A0A067J9R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05157 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09299: 23610-28138 , PASA_asmbl_09300: 26505-26605 , PASA_asmbl_09301: 25339-25578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013241_010 0.0 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
2 Hb_000432_090 0.1043746104 - - calcium-dependent protein kinase [Hevea brasiliensis]
3 Hb_084490_010 0.1067253337 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
4 Hb_000815_240 0.1097346155 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
5 Hb_003925_040 0.1099072422 transcription factor TF Family: C2H2 PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 [Jatropha curcas]
6 Hb_127311_010 0.1104239813 - - hypothetical protein JCGZ_07497 [Jatropha curcas]
7 Hb_012239_020 0.1132930777 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
8 Hb_000951_130 0.1156204362 - - PREDICTED: transcription factor GTE2-like [Jatropha curcas]
9 Hb_010872_070 0.1157585008 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001140_090 0.1177515278 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002042_170 0.1192299877 - - RING/U-box superfamily protein [Theobroma cacao]
12 Hb_005015_080 0.1197679446 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
13 Hb_003894_120 0.1205484892 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]
14 Hb_001766_020 0.1229772378 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
15 Hb_003398_080 0.123994655 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
16 Hb_000019_040 0.1240588178 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
17 Hb_006573_040 0.1270990536 - - DNA binding protein, putative [Ricinus communis]
18 Hb_000015_170 0.1273692675 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000347_400 0.1285295991 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]
20 Hb_026048_110 0.1286775329 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]

Gene co-expression network

sample Hb_013241_010 Hb_013241_010 Hb_000432_090 Hb_000432_090 Hb_013241_010--Hb_000432_090 Hb_084490_010 Hb_084490_010 Hb_013241_010--Hb_084490_010 Hb_000815_240 Hb_000815_240 Hb_013241_010--Hb_000815_240 Hb_003925_040 Hb_003925_040 Hb_013241_010--Hb_003925_040 Hb_127311_010 Hb_127311_010 Hb_013241_010--Hb_127311_010 Hb_012239_020 Hb_012239_020 Hb_013241_010--Hb_012239_020 Hb_010872_070 Hb_010872_070 Hb_000432_090--Hb_010872_070 Hb_000976_280 Hb_000976_280 Hb_000432_090--Hb_000976_280 Hb_000987_060 Hb_000987_060 Hb_000432_090--Hb_000987_060 Hb_002217_020 Hb_002217_020 Hb_000432_090--Hb_002217_020 Hb_001856_200 Hb_001856_200 Hb_000432_090--Hb_001856_200 Hb_007017_040 Hb_007017_040 Hb_084490_010--Hb_007017_040 Hb_000205_240 Hb_000205_240 Hb_084490_010--Hb_000205_240 Hb_084490_010--Hb_012239_020 Hb_084490_010--Hb_003925_040 Hb_003688_180 Hb_003688_180 Hb_084490_010--Hb_003688_180 Hb_084490_010--Hb_000815_240 Hb_000390_250 Hb_000390_250 Hb_000815_240--Hb_000390_250 Hb_000991_040 Hb_000991_040 Hb_000815_240--Hb_000991_040 Hb_005015_080 Hb_005015_080 Hb_000815_240--Hb_005015_080 Hb_000329_230 Hb_000329_230 Hb_000815_240--Hb_000329_230 Hb_000395_040 Hb_000395_040 Hb_000815_240--Hb_000395_040 Hb_003147_060 Hb_003147_060 Hb_003925_040--Hb_003147_060 Hb_004774_020 Hb_004774_020 Hb_003925_040--Hb_004774_020 Hb_009545_090 Hb_009545_090 Hb_003925_040--Hb_009545_090 Hb_004108_240 Hb_004108_240 Hb_003925_040--Hb_004108_240 Hb_002042_170 Hb_002042_170 Hb_003925_040--Hb_002042_170 Hb_010661_010 Hb_010661_010 Hb_127311_010--Hb_010661_010 Hb_000252_210 Hb_000252_210 Hb_127311_010--Hb_000252_210 Hb_001856_220 Hb_001856_220 Hb_127311_010--Hb_001856_220 Hb_002071_050 Hb_002071_050 Hb_127311_010--Hb_002071_050 Hb_000015_170 Hb_000015_170 Hb_127311_010--Hb_000015_170 Hb_000738_020 Hb_000738_020 Hb_012239_020--Hb_000738_020 Hb_000484_130 Hb_000484_130 Hb_012239_020--Hb_000484_130 Hb_000086_420 Hb_000086_420 Hb_012239_020--Hb_000086_420 Hb_004994_240 Hb_004994_240 Hb_012239_020--Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_012239_020--Hb_001300_010 Hb_000327_140 Hb_000327_140 Hb_012239_020--Hb_000327_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1203 46.3534 30.5931 28.537 8.49727 10.5671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7084 14.9788 28.7543 11.9198 12.9278

CAGE analysis