Hb_013344_010

Information

Type -
Description -
Location Contig13344: 46617-54501
Sequence    

Annotation

kegg
ID rcu:RCOM_0588940
description Microtubule-associated protein TORTIFOLIA1, putative
nr
ID XP_012084276.1
description PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
swissprot
ID Q9T041
description Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2
trembl
ID A0A067JV53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19771 PE=4 SV=1
Gene Ontology
ID GO:0006270
description microtubule-associated protein tortifolia1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09481: 46289-47086 , PASA_asmbl_09482: 47104-47261 , PASA_asmbl_09483: 47519-48663 , PASA_asmbl_09484: 48669-48900 , PASA_asmbl_09485: 50312-50480 , PASA_asmbl_09486: 50695-51836 , PASA_asmbl_09487: 51840-52182
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013344_010 0.0 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
2 Hb_000960_120 0.1077386971 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
3 Hb_000260_610 0.1215195101 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
4 Hb_006060_010 0.132494117 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
5 Hb_001329_010 0.1424002882 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000656_320 0.1440740654 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
7 Hb_008406_100 0.1461853057 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
8 Hb_000365_210 0.153122262 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
9 Hb_013834_010 0.1567706994 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
10 Hb_004920_050 0.1586444189 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
11 Hb_002811_210 0.1589143059 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
12 Hb_000288_090 0.1623941421 - - unnamed protein product [Vitis vinifera]
13 Hb_001862_050 0.1637819924 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
14 Hb_000936_030 0.1652324895 - - hypothetical protein RCOM_0615680 [Ricinus communis]
15 Hb_003667_020 0.1654652489 - - conserved hypothetical protein 16 [Hevea brasiliensis]
16 Hb_002400_050 0.1671265987 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
17 Hb_010436_080 0.1673318577 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
18 Hb_024973_020 0.1683247159 - - Protein regulator of cytokinesis, putative [Ricinus communis]
19 Hb_012150_040 0.1699569411 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001761_010 0.1707481046 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]

Gene co-expression network

sample Hb_013344_010 Hb_013344_010 Hb_000960_120 Hb_000960_120 Hb_013344_010--Hb_000960_120 Hb_000260_610 Hb_000260_610 Hb_013344_010--Hb_000260_610 Hb_006060_010 Hb_006060_010 Hb_013344_010--Hb_006060_010 Hb_001329_010 Hb_001329_010 Hb_013344_010--Hb_001329_010 Hb_000656_320 Hb_000656_320 Hb_013344_010--Hb_000656_320 Hb_008406_100 Hb_008406_100 Hb_013344_010--Hb_008406_100 Hb_001761_010 Hb_001761_010 Hb_000960_120--Hb_001761_010 Hb_022092_040 Hb_022092_040 Hb_000960_120--Hb_022092_040 Hb_002811_210 Hb_002811_210 Hb_000960_120--Hb_002811_210 Hb_000960_120--Hb_006060_010 Hb_000960_120--Hb_008406_100 Hb_000260_610--Hb_006060_010 Hb_007545_110 Hb_007545_110 Hb_000260_610--Hb_007545_110 Hb_002400_050 Hb_002400_050 Hb_000260_610--Hb_002400_050 Hb_003667_020 Hb_003667_020 Hb_000260_610--Hb_003667_020 Hb_004920_050 Hb_004920_050 Hb_000260_610--Hb_004920_050 Hb_012753_150 Hb_012753_150 Hb_006060_010--Hb_012753_150 Hb_003878_060 Hb_003878_060 Hb_006060_010--Hb_003878_060 Hb_003119_040 Hb_003119_040 Hb_006060_010--Hb_003119_040 Hb_001329_010--Hb_000656_320 Hb_000556_130 Hb_000556_130 Hb_001329_010--Hb_000556_130 Hb_003813_110 Hb_003813_110 Hb_001329_010--Hb_003813_110 Hb_002942_170 Hb_002942_170 Hb_001329_010--Hb_002942_170 Hb_072201_010 Hb_072201_010 Hb_001329_010--Hb_072201_010 Hb_000656_320--Hb_006060_010 Hb_000936_030 Hb_000936_030 Hb_000656_320--Hb_000936_030 Hb_000577_050 Hb_000577_050 Hb_000656_320--Hb_000577_050 Hb_014497_070 Hb_014497_070 Hb_000656_320--Hb_014497_070 Hb_005162_130 Hb_005162_130 Hb_008406_100--Hb_005162_130 Hb_002007_280 Hb_002007_280 Hb_008406_100--Hb_002007_280 Hb_000345_410 Hb_000345_410 Hb_008406_100--Hb_000345_410 Hb_024973_020 Hb_024973_020 Hb_008406_100--Hb_024973_020 Hb_000365_210 Hb_000365_210 Hb_008406_100--Hb_000365_210 Hb_001501_070 Hb_001501_070 Hb_008406_100--Hb_001501_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.307815 0.761698 6.9033 3.40717 0.393755 0.42658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.123572 0.166692 0.0264819 0.623322 0.265747

CAGE analysis