Hb_013358_010

Information

Type -
Description -
Location Contig13358: 8926-11511
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02360g
description POPTRDRAFT_779106; hypothetical protein
nr
ID KDP33531.1
description hypothetical protein JCGZ_07102 [Jatropha curcas]
swissprot
ID Q9FFU6
description Cytochrome b561, DM13 and DOMON domain-containing protein At5g54830 OS=Arabidopsis thaliana GN=At5g54830 PE=2 SV=1
trembl
ID A0A067KBC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07102 PE=4 SV=1
Gene Ontology
ID GO:0005768
description cytochrome dm13 and domon domain-containing protein at5g54830

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013358_010 0.0 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
2 Hb_004410_120 0.0652066478 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
3 Hb_143766_060 0.0694450821 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
4 Hb_000260_070 0.0732958258 - - kinase, putative [Ricinus communis]
5 Hb_001628_070 0.0754847825 - - hect ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000174_290 0.079988719 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
7 Hb_001217_050 0.0834063554 - - actin binding protein, putative [Ricinus communis]
8 Hb_000215_140 0.0836307885 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
9 Hb_140627_020 0.0839289409 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
10 Hb_031042_050 0.0844854162 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
11 Hb_012490_090 0.0860849337 - - PREDICTED: myosin-17 [Jatropha curcas]
12 Hb_003729_030 0.0863931461 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
13 Hb_000313_120 0.0870739509 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
14 Hb_002260_050 0.0898009435 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004705_020 0.0905119928 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
16 Hb_000024_040 0.0906948526 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
17 Hb_008053_040 0.0909782521 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
18 Hb_010180_060 0.0911254331 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
19 Hb_002780_010 0.0913449774 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
20 Hb_000094_310 0.0923480775 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]

Gene co-expression network

sample Hb_013358_010 Hb_013358_010 Hb_004410_120 Hb_004410_120 Hb_013358_010--Hb_004410_120 Hb_143766_060 Hb_143766_060 Hb_013358_010--Hb_143766_060 Hb_000260_070 Hb_000260_070 Hb_013358_010--Hb_000260_070 Hb_001628_070 Hb_001628_070 Hb_013358_010--Hb_001628_070 Hb_000174_290 Hb_000174_290 Hb_013358_010--Hb_000174_290 Hb_001217_050 Hb_001217_050 Hb_013358_010--Hb_001217_050 Hb_031042_050 Hb_031042_050 Hb_004410_120--Hb_031042_050 Hb_012055_040 Hb_012055_040 Hb_004410_120--Hb_012055_040 Hb_000037_220 Hb_000037_220 Hb_004410_120--Hb_000037_220 Hb_001322_130 Hb_001322_130 Hb_004410_120--Hb_001322_130 Hb_004410_120--Hb_000174_290 Hb_143766_060--Hb_031042_050 Hb_143766_060--Hb_001322_130 Hb_001279_120 Hb_001279_120 Hb_143766_060--Hb_001279_120 Hb_000479_070 Hb_000479_070 Hb_143766_060--Hb_000479_070 Hb_001366_310 Hb_001366_310 Hb_143766_060--Hb_001366_310 Hb_003729_030 Hb_003729_030 Hb_000260_070--Hb_003729_030 Hb_000321_150 Hb_000321_150 Hb_000260_070--Hb_000321_150 Hb_002780_010 Hb_002780_010 Hb_000260_070--Hb_002780_010 Hb_000260_070--Hb_000174_290 Hb_000094_310 Hb_000094_310 Hb_000260_070--Hb_000094_310 Hb_004705_020 Hb_004705_020 Hb_001628_070--Hb_004705_020 Hb_006531_020 Hb_006531_020 Hb_001628_070--Hb_006531_020 Hb_004586_290 Hb_004586_290 Hb_001628_070--Hb_004586_290 Hb_000003_100 Hb_000003_100 Hb_001628_070--Hb_000003_100 Hb_000024_040 Hb_000024_040 Hb_001628_070--Hb_000024_040 Hb_000412_010 Hb_000412_010 Hb_001628_070--Hb_000412_010 Hb_000174_290--Hb_003729_030 Hb_001235_230 Hb_001235_230 Hb_000174_290--Hb_001235_230 Hb_000005_070 Hb_000005_070 Hb_000174_290--Hb_000005_070 Hb_019430_020 Hb_019430_020 Hb_000174_290--Hb_019430_020 Hb_000174_290--Hb_001322_130 Hb_000107_490 Hb_000107_490 Hb_001217_050--Hb_000107_490 Hb_000313_120 Hb_000313_120 Hb_001217_050--Hb_000313_120 Hb_010222_070 Hb_010222_070 Hb_001217_050--Hb_010222_070 Hb_000245_040 Hb_000245_040 Hb_001217_050--Hb_000245_040 Hb_004030_080 Hb_004030_080 Hb_001217_050--Hb_004030_080 Hb_000599_190 Hb_000599_190 Hb_001217_050--Hb_000599_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6505 28.299 8.58297 17.6912 15.9647 11.5878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.0003 7.10342 19.2784 15.8139 17.762

CAGE analysis