Hb_013358_020

Information

Type -
Description -
Location Contig13358: 13714-16440
Sequence    

Annotation

kegg
ID rcu:RCOM_0921770
description ccr4-associated factor, putative (EC:3.1.13.4)
nr
ID XP_002515442.1
description ccr4-associated factor, putative [Ricinus communis]
swissprot
ID Q9SKZ2
description Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2
trembl
ID B9RNX3
description Ccr4-associated factor, putative OS=Ricinus communis GN=RCOM_0921770 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable ccr4-associated factor 1 homolog 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09494: 15064-16527 , PASA_asmbl_09495: 13569-15420
cDNA
(Sanger)
(ID:Location)		 005_E08.ab1: 15614-16524

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013358_020 0.0 - - ccr4-associated factor, putative [Ricinus communis]
2 Hb_000749_070 0.0599865582 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
3 Hb_000035_050 0.076424681 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
4 Hb_007253_010 0.0820199335 - - syntaxin, putative [Ricinus communis]
5 Hb_004117_170 0.0858088792 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
6 Hb_018790_050 0.0868902487 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
7 Hb_084849_010 0.0980797606 - - conserved hypothetical protein [Ricinus communis]
8 Hb_159809_050 0.1001024537 - - AT14A, putative [Ricinus communis]
9 Hb_000072_190 0.1123405997 - - putative S-adenosylmethionine decarboxylase [Prunus dulcis]
10 Hb_005714_100 0.1157948784 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
11 Hb_001135_030 0.1164695102 - - PREDICTED: interaptin-like [Jatropha curcas]
12 Hb_056196_060 0.1172390563 - - hexokinase [Manihot esculenta]
13 Hb_001246_160 0.1175142438 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
14 Hb_000421_230 0.1242108097 - - retinal degeneration B beta, putative [Ricinus communis]
15 Hb_000637_020 0.1305880447 - - PREDICTED: uncharacterized protein LOC105650669 [Jatropha curcas]
16 Hb_003581_280 0.1312720263 - - KINASE 2B family protein [Populus trichocarpa]
17 Hb_001376_010 0.1346730804 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
18 Hb_171900_020 0.1352097687 - - PREDICTED: uncharacterized protein LOC105643207 [Jatropha curcas]
19 Hb_000009_200 0.136599408 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
20 Hb_004631_200 0.1371620148 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_013358_020 Hb_013358_020 Hb_000749_070 Hb_000749_070 Hb_013358_020--Hb_000749_070 Hb_000035_050 Hb_000035_050 Hb_013358_020--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_013358_020--Hb_007253_010 Hb_004117_170 Hb_004117_170 Hb_013358_020--Hb_004117_170 Hb_018790_050 Hb_018790_050 Hb_013358_020--Hb_018790_050 Hb_084849_010 Hb_084849_010 Hb_013358_020--Hb_084849_010 Hb_000749_070--Hb_007253_010 Hb_001246_160 Hb_001246_160 Hb_000749_070--Hb_001246_160 Hb_159809_050 Hb_159809_050 Hb_000749_070--Hb_159809_050 Hb_000749_070--Hb_004117_170 Hb_000749_070--Hb_000035_050 Hb_000035_050--Hb_004117_170 Hb_005714_100 Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_000035_050--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_000035_050--Hb_056196_060 Hb_001376_010 Hb_001376_010 Hb_000035_050--Hb_001376_010 Hb_007253_010--Hb_159809_050 Hb_007253_010--Hb_004117_170 Hb_007253_010--Hb_000035_050 Hb_007253_010--Hb_018790_050 Hb_004117_170--Hb_018790_050 Hb_004117_170--Hb_001376_010 Hb_001898_130 Hb_001898_130 Hb_018790_050--Hb_001898_130 Hb_018790_050--Hb_056196_060 Hb_000637_020 Hb_000637_020 Hb_084849_010--Hb_000637_020 Hb_000072_190 Hb_000072_190 Hb_084849_010--Hb_000072_190 Hb_084849_010--Hb_000035_050 Hb_002450_030 Hb_002450_030 Hb_084849_010--Hb_002450_030 Hb_084849_010--Hb_000749_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.5182 169.27 158.788 153.95 21.11 21.0586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.0831 57.0819 34.2165 31.6597 26.2776

CAGE analysis