Hb_013358_030

Information

Type -
Description -
Location Contig13358: 25288-27526
Sequence    

Annotation

kegg
ID rcu:RCOM_0921730
description ubiquitin-protein ligase, putative
nr
ID XP_012076447.1
description PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
swissprot
ID Q5VRH9
description U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1
trembl
ID A0A067KET4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07099 PE=4 SV=1
Gene Ontology
ID GO:0016874
description arm repeat superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09497: 25597-27216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013358_030 0.0 - - PREDICTED: U-box domain-containing protein 12-like [Jatropha curcas]
2 Hb_003875_040 0.0909558142 - - PREDICTED: endoglucanase 11-like [Jatropha curcas]
3 Hb_146901_020 0.1059161691 - - -
4 Hb_001776_070 0.12230004 - - PREDICTED: glucan endo-1,3-beta-glucosidase isoform X2 [Jatropha curcas]
5 Hb_008143_050 0.1250787217 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
6 Hb_000417_140 0.1298388238 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]
7 Hb_001989_040 0.1330504279 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
8 Hb_000152_590 0.1364639423 - - PREDICTED: 21 kDa protein [Jatropha curcas]
9 Hb_027556_060 0.1366138904 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]
10 Hb_001252_050 0.1370428694 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
11 Hb_133508_020 0.1424188569 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
12 Hb_000111_120 0.1426927638 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_004096_010 0.1430910113 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
14 Hb_010672_010 0.1473414377 - - hypothetical protein JCGZ_00895 [Jatropha curcas]
15 Hb_010598_010 0.1480191961 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
16 Hb_009767_030 0.1487403356 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
17 Hb_001782_100 0.1491264666 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_000535_040 0.1491693772 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
19 Hb_000509_090 0.1516400549 - - Reticuline oxidase precursor, putative [Ricinus communis]
20 Hb_010164_020 0.1518369438 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_013358_030 Hb_013358_030 Hb_003875_040 Hb_003875_040 Hb_013358_030--Hb_003875_040 Hb_146901_020 Hb_146901_020 Hb_013358_030--Hb_146901_020 Hb_001776_070 Hb_001776_070 Hb_013358_030--Hb_001776_070 Hb_008143_050 Hb_008143_050 Hb_013358_030--Hb_008143_050 Hb_000417_140 Hb_000417_140 Hb_013358_030--Hb_000417_140 Hb_001989_040 Hb_001989_040 Hb_013358_030--Hb_001989_040 Hb_003875_040--Hb_146901_020 Hb_000631_100 Hb_000631_100 Hb_003875_040--Hb_000631_100 Hb_003875_040--Hb_001776_070 Hb_005357_120 Hb_005357_120 Hb_003875_040--Hb_005357_120 Hb_027556_060 Hb_027556_060 Hb_003875_040--Hb_027556_060 Hb_000152_590 Hb_000152_590 Hb_146901_020--Hb_000152_590 Hb_146901_020--Hb_027556_060 Hb_010672_010 Hb_010672_010 Hb_146901_020--Hb_010672_010 Hb_003216_140 Hb_003216_140 Hb_146901_020--Hb_003216_140 Hb_010164_020 Hb_010164_020 Hb_001776_070--Hb_010164_020 Hb_000696_030 Hb_000696_030 Hb_001776_070--Hb_000696_030 Hb_001776_070--Hb_027556_060 Hb_005679_110 Hb_005679_110 Hb_001776_070--Hb_005679_110 Hb_001349_020 Hb_001349_020 Hb_001776_070--Hb_001349_020 Hb_005144_080 Hb_005144_080 Hb_001776_070--Hb_005144_080 Hb_001252_050 Hb_001252_050 Hb_008143_050--Hb_001252_050 Hb_000535_040 Hb_000535_040 Hb_008143_050--Hb_000535_040 Hb_005306_030 Hb_005306_030 Hb_008143_050--Hb_005306_030 Hb_008143_050--Hb_000417_140 Hb_000272_010 Hb_000272_010 Hb_008143_050--Hb_000272_010 Hb_000260_670 Hb_000260_670 Hb_008143_050--Hb_000260_670 Hb_000417_140--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_000417_140--Hb_006711_040 Hb_000417_140--Hb_000272_010 Hb_024682_030 Hb_024682_030 Hb_000417_140--Hb_024682_030 Hb_000417_140--Hb_000535_040 Hb_000509_090 Hb_000509_090 Hb_001989_040--Hb_000509_090 Hb_000111_120 Hb_000111_120 Hb_001989_040--Hb_000111_120 Hb_008806_040 Hb_008806_040 Hb_001989_040--Hb_008806_040 Hb_002774_180 Hb_002774_180 Hb_001989_040--Hb_002774_180 Hb_001989_040--Hb_010164_020 Hb_004631_100 Hb_004631_100 Hb_001989_040--Hb_004631_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0907464 4.15176 16.2421 15.6344 0.0424827 0.0110759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.46445 0.304521 0.0383643 10.1246 1.19677

CAGE analysis