Hb_013358_040

Information

Type -
Description -
Location Contig13358: 33413-36391
Sequence    

Annotation

kegg
ID rcu:RCOM_0921720
description Stromal cell-derived factor 2 precursor, putative (EC:2.4.1.109)
nr
ID XP_012076445.1
description PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
swissprot
ID Q93ZE8
description Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana GN=SDF2 PE=1 SV=1
trembl
ID A0A067KBC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07097 PE=4 SV=1
Gene Ontology
ID GO:0005783
description stromal cell-derived factor 2-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09498: 33378-36288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013358_040 0.0 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
2 Hb_000069_310 0.0529349197 - - ubiquitin ligase [Cucumis melo subsp. melo]
3 Hb_000915_180 0.0585030689 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
4 Hb_164010_040 0.0587318991 - - serine/threonine protein kinase, putative [Ricinus communis]
5 Hb_002073_200 0.0592662826 - - Phosphatase 2A-2 [Theobroma cacao]
6 Hb_003428_010 0.0600547816 - - PREDICTED: probable NAD(P)H dehydrogenase (quinone) FQR1-like 1 [Jatropha curcas]
7 Hb_000869_080 0.0618514725 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
8 Hb_007007_120 0.0619087455 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
9 Hb_002754_010 0.0645714474 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
10 Hb_004208_030 0.0648316808 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
11 Hb_062226_130 0.0657865684 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
12 Hb_003001_080 0.0671996975 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
13 Hb_010368_010 0.0686401706 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
14 Hb_003849_110 0.0696726561 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
15 Hb_000331_550 0.0698881194 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
16 Hb_000925_130 0.0712668997 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
17 Hb_000729_030 0.0713398133 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
18 Hb_004052_080 0.0719059304 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003861_060 0.0742617724 - - PREDICTED: treacle protein [Jatropha curcas]
20 Hb_000349_260 0.0748791558 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]

Gene co-expression network

sample Hb_013358_040 Hb_013358_040 Hb_000069_310 Hb_000069_310 Hb_013358_040--Hb_000069_310 Hb_000915_180 Hb_000915_180 Hb_013358_040--Hb_000915_180 Hb_164010_040 Hb_164010_040 Hb_013358_040--Hb_164010_040 Hb_002073_200 Hb_002073_200 Hb_013358_040--Hb_002073_200 Hb_003428_010 Hb_003428_010 Hb_013358_040--Hb_003428_010 Hb_000869_080 Hb_000869_080 Hb_013358_040--Hb_000869_080 Hb_003849_110 Hb_003849_110 Hb_000069_310--Hb_003849_110 Hb_000069_310--Hb_000915_180 Hb_002818_030 Hb_002818_030 Hb_000069_310--Hb_002818_030 Hb_001473_160 Hb_001473_160 Hb_000069_310--Hb_001473_160 Hb_000331_680 Hb_000331_680 Hb_000069_310--Hb_000331_680 Hb_001195_530 Hb_001195_530 Hb_000915_180--Hb_001195_530 Hb_021419_030 Hb_021419_030 Hb_000915_180--Hb_021419_030 Hb_001408_140 Hb_001408_140 Hb_000915_180--Hb_001408_140 Hb_000915_180--Hb_000331_680 Hb_002754_010 Hb_002754_010 Hb_164010_040--Hb_002754_010 Hb_164010_040--Hb_000869_080 Hb_062226_130 Hb_062226_130 Hb_164010_040--Hb_062226_130 Hb_001278_100 Hb_001278_100 Hb_164010_040--Hb_001278_100 Hb_164010_040--Hb_002073_200 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_000025_730 Hb_000025_730 Hb_002073_200--Hb_000025_730 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010 Hb_004052_080 Hb_004052_080 Hb_003428_010--Hb_004052_080 Hb_007007_120 Hb_007007_120 Hb_003428_010--Hb_007007_120 Hb_003428_010--Hb_003849_110 Hb_002849_130 Hb_002849_130 Hb_003428_010--Hb_002849_130 Hb_003861_060 Hb_003861_060 Hb_003428_010--Hb_003861_060 Hb_014834_150 Hb_014834_150 Hb_003428_010--Hb_014834_150 Hb_000729_030 Hb_000729_030 Hb_000869_080--Hb_000729_030 Hb_000869_080--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_000869_080--Hb_005162_090 Hb_000869_080--Hb_002073_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.837 62.8359 67.9247 59.8223 48.0103 47.1808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.2865 64.6821 66.8631 37.0949 53.2559

CAGE analysis