Hb_013358_100

Information

Type -
Description -
Location Contig13358: 105140-105340
Sequence    

Annotation

kegg
ID -
description -
nr
ID AFK45208.1
description unknown [Medicago truncatula]
swissprot
ID -
description -
trembl
ID I3SY66
description Uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09507: 103715-105620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013358_100 0.0 - - unknown [Medicago truncatula]
2 Hb_177152_010 0.1264568874 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
3 Hb_068569_010 0.1302220235 - - -
4 Hb_040747_010 0.1482764103 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
5 Hb_035436_010 0.1493225262 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
6 Hb_004935_080 0.1504072632 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
7 Hb_065841_010 0.1648101229 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
8 Hb_178620_010 0.1680541152 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
9 Hb_161994_040 0.175663597 - - -
10 Hb_009393_200 0.1802509669 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
11 Hb_000311_030 0.1846463525 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
12 Hb_070469_010 0.1848989315 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
13 Hb_008054_050 0.1851298374 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
14 Hb_169329_010 0.1866605284 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
15 Hb_145317_010 0.1884252646 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
16 Hb_077573_010 0.1896923898 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_010964_020 0.190196628 - - RNA helicase [Arabidopsis thaliana]
18 Hb_003038_220 0.1903278599 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
19 Hb_003813_080 0.1981959444 - - PREDICTED: uncharacterized protein LOC105133003 [Populus euphratica]
20 Hb_142751_010 0.2033138585 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_013358_100 Hb_013358_100 Hb_177152_010 Hb_177152_010 Hb_013358_100--Hb_177152_010 Hb_068569_010 Hb_068569_010 Hb_013358_100--Hb_068569_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_035436_010 Hb_035436_010 Hb_013358_100--Hb_035436_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_065841_010 Hb_065841_010 Hb_013358_100--Hb_065841_010 Hb_145317_010 Hb_145317_010 Hb_177152_010--Hb_145317_010 Hb_169329_010 Hb_169329_010 Hb_177152_010--Hb_169329_010 Hb_177152_010--Hb_035436_010 Hb_177152_010--Hb_065841_010 Hb_178620_010 Hb_178620_010 Hb_177152_010--Hb_178620_010 Hb_010964_020 Hb_010964_020 Hb_068569_010--Hb_010964_020 Hb_068569_010--Hb_178620_010 Hb_000053_030 Hb_000053_030 Hb_068569_010--Hb_000053_030 Hb_068569_010--Hb_065841_010 Hb_033385_010 Hb_033385_010 Hb_068569_010--Hb_033385_010 Hb_106688_010 Hb_106688_010 Hb_040747_010--Hb_106688_010 Hb_000179_180 Hb_000179_180 Hb_040747_010--Hb_000179_180 Hb_000116_150 Hb_000116_150 Hb_040747_010--Hb_000116_150 Hb_077573_010 Hb_077573_010 Hb_040747_010--Hb_077573_010 Hb_040747_010--Hb_145317_010 Hb_054541_010 Hb_054541_010 Hb_035436_010--Hb_054541_010 Hb_035436_010--Hb_010964_020 Hb_035436_010--Hb_178620_010 Hb_025905_020 Hb_025905_020 Hb_035436_010--Hb_025905_020 Hb_070469_010 Hb_070469_010 Hb_004935_080--Hb_070469_010 Hb_002320_070 Hb_002320_070 Hb_004935_080--Hb_002320_070 Hb_000130_190 Hb_000130_190 Hb_004935_080--Hb_000130_190 Hb_003038_220 Hb_003038_220 Hb_004935_080--Hb_003038_220 Hb_009393_200 Hb_009393_200 Hb_004935_080--Hb_009393_200 Hb_007157_060 Hb_007157_060 Hb_065841_010--Hb_007157_060 Hb_008054_050 Hb_008054_050 Hb_065841_010--Hb_008054_050 Hb_161994_040 Hb_161994_040 Hb_065841_010--Hb_161994_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.3224 53.0491 40.479 131.725 21.0548 102.73
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3081 10.4239 5.03059 13.9378 9.05125

CAGE analysis