Hb_013394_020

Information

Type -
Description -
Location Contig13394: 7504-8047
Sequence    

Annotation

kegg
ID vvi:104877434
description putative laccase-9
nr
ID XP_010645794.1
description PREDICTED: putative laccase-9 [Vitis vinifera]
swissprot
ID Q84J37
description Laccase-15 OS=Arabidopsis thaliana GN=TT10 PE=1 SV=1
trembl
ID B9SMB1
description Laccase OS=Ricinus communis GN=RCOM_0298470 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-14-like isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_020 0.0 - - PREDICTED: putative laccase-9 [Vitis vinifera]
2 Hb_067466_010 0.2899441248 - - ankyrin repeat protein [Bruguiera gymnorhiza]
3 Hb_002217_420 0.2971372746 - - hypothetical protein EUTSA_v10021493mg [Eutrema salsugineum]
4 Hb_003925_030 0.3101819661 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012654_030 0.3236899523 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005679_100 0.3252300981 - - hypothetical protein POPTR_0013s15630g [Populus trichocarpa]
7 Hb_006769_010 0.3320203179 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
8 Hb_012146_040 0.3341034451 - - PREDICTED: amino-acid permease BAT1 homolog [Jatropha curcas]
9 Hb_002498_280 0.3387315255 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
10 Hb_000828_040 0.3418278939 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
11 Hb_037063_010 0.3478121873 - - -
12 Hb_005333_150 0.3493388164 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
13 Hb_003929_060 0.3505450959 - - PREDICTED: uncharacterized protein ECU03_1610 [Jatropha curcas]
14 Hb_131967_010 0.3518044551 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_001089_040 0.3587406046 transcription factor TF Family: bHLH DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
16 Hb_006922_060 0.3600345304 - - calcineurin B, putative [Ricinus communis]
17 Hb_001507_100 0.360684876 - - cytochrome P450, putative [Ricinus communis]
18 Hb_005389_110 0.3607305388 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
19 Hb_035662_010 0.3609601485 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000613_210 0.3635675728 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_013394_020 Hb_013394_020 Hb_067466_010 Hb_067466_010 Hb_013394_020--Hb_067466_010 Hb_002217_420 Hb_002217_420 Hb_013394_020--Hb_002217_420 Hb_003925_030 Hb_003925_030 Hb_013394_020--Hb_003925_030 Hb_012654_030 Hb_012654_030 Hb_013394_020--Hb_012654_030 Hb_005679_100 Hb_005679_100 Hb_013394_020--Hb_005679_100 Hb_006769_010 Hb_006769_010 Hb_013394_020--Hb_006769_010 Hb_011794_040 Hb_011794_040 Hb_067466_010--Hb_011794_040 Hb_131967_010 Hb_131967_010 Hb_067466_010--Hb_131967_010 Hb_000261_180 Hb_000261_180 Hb_067466_010--Hb_000261_180 Hb_000392_100 Hb_000392_100 Hb_067466_010--Hb_000392_100 Hb_007694_050 Hb_007694_050 Hb_067466_010--Hb_007694_050 Hb_078477_050 Hb_078477_050 Hb_067466_010--Hb_078477_050 Hb_002498_280 Hb_002498_280 Hb_002217_420--Hb_002498_280 Hb_000115_310 Hb_000115_310 Hb_002217_420--Hb_000115_310 Hb_000010_250 Hb_000010_250 Hb_002217_420--Hb_000010_250 Hb_002890_210 Hb_002890_210 Hb_002217_420--Hb_002890_210 Hb_094022_010 Hb_094022_010 Hb_002217_420--Hb_094022_010 Hb_039894_010 Hb_039894_010 Hb_002217_420--Hb_039894_010 Hb_003925_030--Hb_131967_010 Hb_003925_030--Hb_006769_010 Hb_000023_160 Hb_000023_160 Hb_003925_030--Hb_000023_160 Hb_000029_100 Hb_000029_100 Hb_003925_030--Hb_000029_100 Hb_002148_020 Hb_002148_020 Hb_003925_030--Hb_002148_020 Hb_000415_070 Hb_000415_070 Hb_003925_030--Hb_000415_070 Hb_005389_130 Hb_005389_130 Hb_012654_030--Hb_005389_130 Hb_003788_060 Hb_003788_060 Hb_012654_030--Hb_003788_060 Hb_001994_010 Hb_001994_010 Hb_012654_030--Hb_001994_010 Hb_007809_070 Hb_007809_070 Hb_012654_030--Hb_007809_070 Hb_022790_030 Hb_022790_030 Hb_012654_030--Hb_022790_030 Hb_001104_240 Hb_001104_240 Hb_005679_100--Hb_001104_240 Hb_004410_150 Hb_004410_150 Hb_005679_100--Hb_004410_150 Hb_004788_040 Hb_004788_040 Hb_005679_100--Hb_004788_040 Hb_000140_410 Hb_000140_410 Hb_005679_100--Hb_000140_410 Hb_044724_010 Hb_044724_010 Hb_005679_100--Hb_044724_010 Hb_001529_050 Hb_001529_050 Hb_005679_100--Hb_001529_050 Hb_006769_010--Hb_000029_100 Hb_000130_060 Hb_000130_060 Hb_006769_010--Hb_000130_060 Hb_004724_120 Hb_004724_120 Hb_006769_010--Hb_004724_120 Hb_002836_100 Hb_002836_100 Hb_006769_010--Hb_002836_100 Hb_134894_010 Hb_134894_010 Hb_006769_010--Hb_134894_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.4265 2.33123 0 7.26009 2.47388 3.60495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.92768 7.8703 0 19.233 0

CAGE analysis