Hb_013394_030

Information

Type -
Description -
Location Contig13394: 15635-37936
Sequence    

Annotation

kegg
ID vvi:100247582
description exocyst complex component SEC6
nr
ID XP_002264732.1
description PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
swissprot
ID Q94AI6
description Exocyst complex component SEC6 OS=Arabidopsis thaliana GN=SEC6 PE=1 SV=1
trembl
ID D7TY76
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0097g00670 PE=4 SV=1
Gene Ontology
ID GO:0000145
description exocyst complex component sec6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09538: 15766-37929
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_030 0.0 - - PREDICTED: exocyst complex component SEC6 [Vitis vinifera]
2 Hb_002067_030 0.06929936 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
3 Hb_128548_010 0.0696869305 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000144_070 0.0705185372 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004994_010 0.0726187766 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
6 Hb_010407_050 0.0728342062 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
7 Hb_008568_020 0.0742073294 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
8 Hb_000260_680 0.0742737843 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
9 Hb_006688_050 0.0764615558 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
10 Hb_001776_060 0.078301688 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
11 Hb_000390_230 0.0794986188 - - PREDICTED: transducin beta-like protein 3 [Jatropha curcas]
12 Hb_000402_120 0.0796430211 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
13 Hb_154580_010 0.0806122409 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
14 Hb_002909_040 0.0816069734 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
15 Hb_001636_050 0.0816491549 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
16 Hb_005779_010 0.0817573293 - - catalytic, putative [Ricinus communis]
17 Hb_001430_080 0.0823873408 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
18 Hb_003927_040 0.0831939384 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
19 Hb_012384_030 0.0838780763 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Jatropha curcas]
20 Hb_032264_060 0.0847721215 - - hypothetical protein JCGZ_02506 [Jatropha curcas]

Gene co-expression network

sample Hb_013394_030 Hb_013394_030 Hb_002067_030 Hb_002067_030 Hb_013394_030--Hb_002067_030 Hb_128548_010 Hb_128548_010 Hb_013394_030--Hb_128548_010 Hb_000144_070 Hb_000144_070 Hb_013394_030--Hb_000144_070 Hb_004994_010 Hb_004994_010 Hb_013394_030--Hb_004994_010 Hb_010407_050 Hb_010407_050 Hb_013394_030--Hb_010407_050 Hb_008568_020 Hb_008568_020 Hb_013394_030--Hb_008568_020 Hb_000098_140 Hb_000098_140 Hb_002067_030--Hb_000098_140 Hb_154580_010 Hb_154580_010 Hb_002067_030--Hb_154580_010 Hb_001636_050 Hb_001636_050 Hb_002067_030--Hb_001636_050 Hb_000260_680 Hb_000260_680 Hb_002067_030--Hb_000260_680 Hb_000329_590 Hb_000329_590 Hb_002067_030--Hb_000329_590 Hb_000523_080 Hb_000523_080 Hb_128548_010--Hb_000523_080 Hb_001430_080 Hb_001430_080 Hb_128548_010--Hb_001430_080 Hb_001723_140 Hb_001723_140 Hb_128548_010--Hb_001723_140 Hb_128548_010--Hb_008568_020 Hb_003943_020 Hb_003943_020 Hb_128548_010--Hb_003943_020 Hb_001584_350 Hb_001584_350 Hb_128548_010--Hb_001584_350 Hb_001776_060 Hb_001776_060 Hb_000144_070--Hb_001776_060 Hb_000339_040 Hb_000339_040 Hb_000144_070--Hb_000339_040 Hb_000789_320 Hb_000789_320 Hb_000144_070--Hb_000789_320 Hb_012384_030 Hb_012384_030 Hb_000144_070--Hb_012384_030 Hb_000352_350 Hb_000352_350 Hb_000144_070--Hb_000352_350 Hb_003861_050 Hb_003861_050 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_001456_060 Hb_001456_060 Hb_004994_010--Hb_001456_060 Hb_000359_040 Hb_000359_040 Hb_004994_010--Hb_000359_040 Hb_004994_010--Hb_010407_050 Hb_004994_010--Hb_000339_040 Hb_006688_050 Hb_006688_050 Hb_010407_050--Hb_006688_050 Hb_001488_200 Hb_001488_200 Hb_010407_050--Hb_001488_200 Hb_000879_180 Hb_000879_180 Hb_010407_050--Hb_000879_180 Hb_010407_050--Hb_003861_050 Hb_001005_030 Hb_001005_030 Hb_010407_050--Hb_001005_030 Hb_003096_060 Hb_003096_060 Hb_008568_020--Hb_003096_060 Hb_001635_040 Hb_001635_040 Hb_008568_020--Hb_001635_040 Hb_008568_020--Hb_154580_010 Hb_000836_410 Hb_000836_410 Hb_008568_020--Hb_000836_410 Hb_000645_170 Hb_000645_170 Hb_008568_020--Hb_000645_170 Hb_002615_120 Hb_002615_120 Hb_008568_020--Hb_002615_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2421 22.3639 31.74 17.2408 23.0434 16.0304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.85212 16.186 12.2842 20.0232 15.6683

CAGE analysis