Hb_013394_060

Information

Type -
Description -
Location Contig13394: 65815-70834
Sequence    

Annotation

kegg
ID rcu:RCOM_0186330
description protein with unknown function
nr
ID XP_012089676.1
description PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID A0A067JSA2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01959 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09545: 65871-70758 , PASA_asmbl_09546: 67433-70134
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_060 0.0 - - PREDICTED: IST1-like protein isoform X1 [Jatropha curcas]
2 Hb_002999_060 0.0843678982 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
3 Hb_000483_380 0.1043340159 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
4 Hb_002965_030 0.1092994126 - - PREDICTED: uncharacterized protein LOC105643493 [Jatropha curcas]
5 Hb_000720_070 0.1141381829 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
6 Hb_030827_060 0.1277211521 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2b [Jatropha curcas]
7 Hb_000538_010 0.13432661 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
8 Hb_000422_110 0.1401361206 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
9 Hb_001902_060 0.147018235 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
10 Hb_000787_090 0.149355031 - - PREDICTED: DDRGK domain-containing protein 1 [Vitis vinifera]
11 Hb_143243_010 0.1525733344 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
12 Hb_033312_150 0.1541310272 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
13 Hb_001051_090 0.1550329203 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
14 Hb_013749_020 0.1578017437 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
15 Hb_000122_250 0.159674456 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2C, putative [Ricinus communis]
16 Hb_001189_130 0.1609193944 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
17 Hb_000953_030 0.1610472471 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
18 Hb_132697_010 0.1610695276 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001083_030 0.1613983616 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
20 Hb_002896_060 0.1625843831 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_013394_060 Hb_013394_060 Hb_002999_060 Hb_002999_060 Hb_013394_060--Hb_002999_060 Hb_000483_380 Hb_000483_380 Hb_013394_060--Hb_000483_380 Hb_002965_030 Hb_002965_030 Hb_013394_060--Hb_002965_030 Hb_000720_070 Hb_000720_070 Hb_013394_060--Hb_000720_070 Hb_030827_060 Hb_030827_060 Hb_013394_060--Hb_030827_060 Hb_000538_010 Hb_000538_010 Hb_013394_060--Hb_000538_010 Hb_002999_060--Hb_002965_030 Hb_002999_060--Hb_030827_060 Hb_002999_060--Hb_000720_070 Hb_002999_060--Hb_000483_380 Hb_000422_110 Hb_000422_110 Hb_002999_060--Hb_000422_110 Hb_003040_020 Hb_003040_020 Hb_000483_380--Hb_003040_020 Hb_158604_010 Hb_158604_010 Hb_000483_380--Hb_158604_010 Hb_033312_150 Hb_033312_150 Hb_000483_380--Hb_033312_150 Hb_013749_020 Hb_013749_020 Hb_000483_380--Hb_013749_020 Hb_000116_060 Hb_000116_060 Hb_000483_380--Hb_000116_060 Hb_000544_060 Hb_000544_060 Hb_000483_380--Hb_000544_060 Hb_000735_100 Hb_000735_100 Hb_002965_030--Hb_000735_100 Hb_002965_030--Hb_000720_070 Hb_002896_060 Hb_002896_060 Hb_002965_030--Hb_002896_060 Hb_001946_240 Hb_001946_240 Hb_002965_030--Hb_001946_240 Hb_001534_070 Hb_001534_070 Hb_000720_070--Hb_001534_070 Hb_005725_020 Hb_005725_020 Hb_000720_070--Hb_005725_020 Hb_027420_050 Hb_027420_050 Hb_000720_070--Hb_027420_050 Hb_030827_060--Hb_000422_110 Hb_026198_040 Hb_026198_040 Hb_030827_060--Hb_026198_040 Hb_104265_030 Hb_104265_030 Hb_030827_060--Hb_104265_030 Hb_018133_030 Hb_018133_030 Hb_030827_060--Hb_018133_030 Hb_004449_050 Hb_004449_050 Hb_030827_060--Hb_004449_050 Hb_001307_010 Hb_001307_010 Hb_000538_010--Hb_001307_010 Hb_031711_010 Hb_031711_010 Hb_000538_010--Hb_031711_010 Hb_000390_220 Hb_000390_220 Hb_000538_010--Hb_000390_220 Hb_000920_250 Hb_000920_250 Hb_000538_010--Hb_000920_250 Hb_001189_130 Hb_001189_130 Hb_000538_010--Hb_001189_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.593 65.4054 25.7686 28.02 107.218 29.4682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9106 15.9734 19.6688 16.1362 11.9231

CAGE analysis