Hb_013394_110

Information

Type -
Description -
Location Contig13394: 111713-114805
Sequence    

Annotation

kegg
ID rcu:RCOM_0664320
description zinc finger protein, putative
nr
ID XP_002533311.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FNP2
description GDSL esterase/lipase At5g08460 OS=Arabidopsis thaliana GN=At5g08460 PE=2 SV=1
trembl
ID B9T4Z2
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0664320 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g29670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09559: 111765-114539
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_110 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_005858_010 0.0629247806 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
3 Hb_012758_020 0.0630166387 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
4 Hb_000245_010 0.0630520821 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Populus euphratica]
5 Hb_002383_010 0.0634349715 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
6 Hb_000005_150 0.0635762306 - - PREDICTED: cation/H(+) antiporter 10-like [Jatropha curcas]
7 Hb_001414_070 0.0636603777 - - Zinc finger protein GIS2 [Medicago truncatula]
8 Hb_007138_020 0.0636880487 - - hypothetical protein POPTR_0019s09630g [Populus trichocarpa]
9 Hb_077165_010 0.0637084842 - - conserved hypothetical protein [Ricinus communis]
10 Hb_014776_010 0.0638442798 - - PREDICTED: receptor-like protein kinase 5 [Jatropha curcas]
11 Hb_088508_010 0.0639386625 - - cytochrome P450, putative [Ricinus communis]
12 Hb_014223_030 0.0640814981 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Jatropha curcas]
13 Hb_002471_030 0.0641646244 - - PREDICTED: cyclin-J18 [Jatropha curcas]
14 Hb_000018_080 0.0648267481 - - hypothetical protein JCGZ_07748 [Jatropha curcas]
15 Hb_011515_020 0.065130629 - - PREDICTED: dehydration-responsive element-binding protein 1F-like [Jatropha curcas]
16 Hb_007292_040 0.0653714761 - - Plastid developmental protein DAG [Theobroma cacao]
17 Hb_000762_100 0.065489768 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
18 Hb_001140_120 0.0655746985 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
19 Hb_001098_060 0.0658228634 - - -
20 Hb_001021_190 0.0658738669 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]

Gene co-expression network

sample Hb_013394_110 Hb_013394_110 Hb_005858_010 Hb_005858_010 Hb_013394_110--Hb_005858_010 Hb_012758_020 Hb_012758_020 Hb_013394_110--Hb_012758_020 Hb_000245_010 Hb_000245_010 Hb_013394_110--Hb_000245_010 Hb_002383_010 Hb_002383_010 Hb_013394_110--Hb_002383_010 Hb_000005_150 Hb_000005_150 Hb_013394_110--Hb_000005_150 Hb_001414_070 Hb_001414_070 Hb_013394_110--Hb_001414_070 Hb_005858_010--Hb_012758_020 Hb_005858_010--Hb_002383_010 Hb_005858_010--Hb_000245_010 Hb_005858_010--Hb_000005_150 Hb_077165_010 Hb_077165_010 Hb_005858_010--Hb_077165_010 Hb_005858_010--Hb_001414_070 Hb_012758_020--Hb_002383_010 Hb_012758_020--Hb_000005_150 Hb_012758_020--Hb_077165_010 Hb_012758_020--Hb_000245_010 Hb_011515_020 Hb_011515_020 Hb_012758_020--Hb_011515_020 Hb_000245_010--Hb_001414_070 Hb_007138_020 Hb_007138_020 Hb_000245_010--Hb_007138_020 Hb_014776_010 Hb_014776_010 Hb_000245_010--Hb_014776_010 Hb_088508_010 Hb_088508_010 Hb_000245_010--Hb_088508_010 Hb_014223_030 Hb_014223_030 Hb_000245_010--Hb_014223_030 Hb_002383_010--Hb_000005_150 Hb_002383_010--Hb_077165_010 Hb_002383_010--Hb_011515_020 Hb_001021_190 Hb_001021_190 Hb_002383_010--Hb_001021_190 Hb_000005_150--Hb_077165_010 Hb_000005_150--Hb_011515_020 Hb_000005_150--Hb_001021_190 Hb_001414_070--Hb_007138_020 Hb_001414_070--Hb_014776_010 Hb_001414_070--Hb_088508_010 Hb_001414_070--Hb_014223_030 Hb_002471_030 Hb_002471_030 Hb_001414_070--Hb_002471_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.127434 8.61472 15.2228 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0620945

CAGE analysis