Hb_013394_120

Information

Type -
Description -
Location Contig13394: 142794-145307
Sequence    

Annotation

kegg
ID cic:CICLE_v10003606mg
description hypothetical protein
nr
ID XP_012080809.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
swissprot
ID Q9XID3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 OS=Arabidopsis thaliana GN=At1g34300 PE=2 SV=1
trembl
ID A0A067K362
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_16686 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase at1g34300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09561: 142709-142856 , PASA_asmbl_09562: 142926-145499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013394_120 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
2 Hb_001789_120 0.044781554 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
3 Hb_010222_060 0.0529954366 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_132840_170 0.0604733862 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
5 Hb_000818_090 0.0626443834 - - glutamate receptor 3 plant, putative [Ricinus communis]
6 Hb_009522_020 0.0632072021 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
7 Hb_014700_030 0.0741530797 - - tryptophan synthase beta chain, putative [Ricinus communis]
8 Hb_004880_050 0.0832936606 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009393_090 0.0839502029 - - acyltransferase, putative [Ricinus communis]
10 Hb_173387_010 0.0927816849 - - hypothetical protein POPTR_0017s13190g, partial [Populus trichocarpa]
11 Hb_000815_090 0.0935597194 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
12 Hb_001098_040 0.0978152423 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
13 Hb_002942_200 0.1018849702 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
14 Hb_001417_060 0.1027052575 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
15 Hb_001296_060 0.104450953 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
16 Hb_001100_070 0.1056066795 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001289_010 0.1071402131 - - PREDICTED: chaperone protein ClpB4, mitochondrial [Vitis vinifera]
18 Hb_002713_060 0.1086054578 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
19 Hb_102179_010 0.1088972522 - - protein binding protein, putative [Ricinus communis]
20 Hb_001206_100 0.1109434397 - - hypothetical protein PRUPE_ppa021915mg, partial [Prunus persica]

Gene co-expression network

sample Hb_013394_120 Hb_013394_120 Hb_001789_120 Hb_001789_120 Hb_013394_120--Hb_001789_120 Hb_010222_060 Hb_010222_060 Hb_013394_120--Hb_010222_060 Hb_132840_170 Hb_132840_170 Hb_013394_120--Hb_132840_170 Hb_000818_090 Hb_000818_090 Hb_013394_120--Hb_000818_090 Hb_009522_020 Hb_009522_020 Hb_013394_120--Hb_009522_020 Hb_014700_030 Hb_014700_030 Hb_013394_120--Hb_014700_030 Hb_001789_120--Hb_000818_090 Hb_004880_050 Hb_004880_050 Hb_001789_120--Hb_004880_050 Hb_001789_120--Hb_014700_030 Hb_001789_120--Hb_010222_060 Hb_001789_120--Hb_132840_170 Hb_010222_060--Hb_014700_030 Hb_010222_060--Hb_009522_020 Hb_010222_060--Hb_132840_170 Hb_002713_060 Hb_002713_060 Hb_010222_060--Hb_002713_060 Hb_173387_010 Hb_173387_010 Hb_132840_170--Hb_173387_010 Hb_000815_090 Hb_000815_090 Hb_132840_170--Hb_000815_090 Hb_132840_170--Hb_009522_020 Hb_132840_170--Hb_014700_030 Hb_009393_090 Hb_009393_090 Hb_000818_090--Hb_009393_090 Hb_000818_090--Hb_004880_050 Hb_005365_010 Hb_005365_010 Hb_000818_090--Hb_005365_010 Hb_001100_070 Hb_001100_070 Hb_000818_090--Hb_001100_070 Hb_009522_020--Hb_173387_010 Hb_001206_100 Hb_001206_100 Hb_009522_020--Hb_001206_100 Hb_005183_100 Hb_005183_100 Hb_009522_020--Hb_005183_100 Hb_001296_060 Hb_001296_060 Hb_009522_020--Hb_001296_060 Hb_014700_030--Hb_004880_050 Hb_032779_010 Hb_032779_010 Hb_014700_030--Hb_032779_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0501156 19.8002 30.9263 42.2541 0.0299775 0.0348376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.193178 0.124372 0.0263473 3.98932 54.2313

CAGE analysis