Hb_013399_010

Information

Type -
Description -
Location Contig13399: 14881-16978
Sequence    

Annotation

kegg
ID rcu:RCOM_0653390
description hypothetical protein
nr
ID XP_012068895.1
description PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
swissprot
ID Q9M347
description Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6 PE=1 SV=1
trembl
ID A0A067KX71
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24711 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09563: 15902-16641
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013399_010 0.0 - - PREDICTED: uncharacterized protein LOC105631404 isoform X2 [Jatropha curcas]
2 Hb_001504_050 0.1792380572 - - hypothetical protein POPTR_0001s14840g [Populus trichocarpa]
3 Hb_000866_240 0.1942512356 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
4 Hb_000029_080 0.1960174089 - - PREDICTED: cold-inducible RNA-binding protein B-like [Jatropha curcas]
5 Hb_009476_020 0.2020868169 - - tryptophan biosynthesis protein, putative [Ricinus communis]
6 Hb_007885_010 0.2028218043 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
7 Hb_000676_140 0.2063298095 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_000011_570 0.21166175 - - PREDICTED: 40S ribosomal protein SA-like [Jatropha curcas]
9 Hb_003058_080 0.21349253 - - Chaperonin 10 isoform 1 [Theobroma cacao]
10 Hb_001096_090 0.2163451193 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
11 Hb_002972_010 0.2174820759 - - PREDICTED: magnesium-dependent phosphatase 1 [Jatropha curcas]
12 Hb_000224_200 0.2189337106 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
13 Hb_177215_040 0.2204710059 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
14 Hb_000699_040 0.2217013307 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
15 Hb_010815_030 0.2239297708 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
16 Hb_002713_080 0.2246338943 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_000144_080 0.2247229983 - - PREDICTED: uncharacterized protein LOC104609774 [Nelumbo nucifera]
18 Hb_009486_150 0.2286682075 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
19 Hb_007245_080 0.2297501167 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
20 Hb_015299_030 0.2297531497 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]

Gene co-expression network

sample Hb_013399_010 Hb_013399_010 Hb_001504_050 Hb_001504_050 Hb_013399_010--Hb_001504_050 Hb_000866_240 Hb_000866_240 Hb_013399_010--Hb_000866_240 Hb_000029_080 Hb_000029_080 Hb_013399_010--Hb_000029_080 Hb_009476_020 Hb_009476_020 Hb_013399_010--Hb_009476_020 Hb_007885_010 Hb_007885_010 Hb_013399_010--Hb_007885_010 Hb_000676_140 Hb_000676_140 Hb_013399_010--Hb_000676_140 Hb_000699_040 Hb_000699_040 Hb_001504_050--Hb_000699_040 Hb_004052_020 Hb_004052_020 Hb_001504_050--Hb_004052_020 Hb_003058_080 Hb_003058_080 Hb_001504_050--Hb_003058_080 Hb_000451_060 Hb_000451_060 Hb_001504_050--Hb_000451_060 Hb_000191_030 Hb_000191_030 Hb_001504_050--Hb_000191_030 Hb_000297_230 Hb_000297_230 Hb_001504_050--Hb_000297_230 Hb_001863_430 Hb_001863_430 Hb_000866_240--Hb_001863_430 Hb_000866_240--Hb_009476_020 Hb_000155_160 Hb_000155_160 Hb_000866_240--Hb_000155_160 Hb_000035_370 Hb_000035_370 Hb_000866_240--Hb_000035_370 Hb_000866_240--Hb_000676_140 Hb_000506_070 Hb_000506_070 Hb_000866_240--Hb_000506_070 Hb_000568_060 Hb_000568_060 Hb_000029_080--Hb_000568_060 Hb_005211_180 Hb_005211_180 Hb_000029_080--Hb_005211_180 Hb_177215_040 Hb_177215_040 Hb_000029_080--Hb_177215_040 Hb_000045_300 Hb_000045_300 Hb_000029_080--Hb_000045_300 Hb_000164_100 Hb_000164_100 Hb_000029_080--Hb_000164_100 Hb_002686_190 Hb_002686_190 Hb_000029_080--Hb_002686_190 Hb_007245_080 Hb_007245_080 Hb_009476_020--Hb_007245_080 Hb_009476_020--Hb_000506_070 Hb_000735_040 Hb_000735_040 Hb_009476_020--Hb_000735_040 Hb_174865_010 Hb_174865_010 Hb_009476_020--Hb_174865_010 Hb_000676_160 Hb_000676_160 Hb_009476_020--Hb_000676_160 Hb_003018_020 Hb_003018_020 Hb_009476_020--Hb_003018_020 Hb_000809_060 Hb_000809_060 Hb_007885_010--Hb_000809_060 Hb_001754_140 Hb_001754_140 Hb_007885_010--Hb_001754_140 Hb_000159_070 Hb_000159_070 Hb_007885_010--Hb_000159_070 Hb_001512_050 Hb_001512_050 Hb_007885_010--Hb_001512_050 Hb_007885_010--Hb_003058_080 Hb_000212_210 Hb_000212_210 Hb_007885_010--Hb_000212_210 Hb_000011_570 Hb_000011_570 Hb_000676_140--Hb_000011_570 Hb_004709_010 Hb_004709_010 Hb_000676_140--Hb_004709_010 Hb_014720_040 Hb_014720_040 Hb_000676_140--Hb_014720_040 Hb_001016_150 Hb_001016_150 Hb_000676_140--Hb_001016_150 Hb_000676_140--Hb_001863_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0720062 0.466416 1.22073 0.530255 0.334714 0.563231
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.46004 2.18562 0.136882 0.163645 0.228281

CAGE analysis