Hb_013399_070

Information

Type -
Description -
Location Contig13399: 45705-53218
Sequence    

Annotation

kegg
ID rcu:RCOM_0653560
description hypothetical protein
nr
ID XP_012068901.1
description PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KX76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24716 PE=4 SV=1
Gene Ontology
ID GO:0005515
description hydroxyproline-rich glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09570: 45743-51487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013399_070 0.0 - - PREDICTED: uncharacterized protein LOC105631409 isoform X1 [Jatropha curcas]
2 Hb_000170_150 0.0670067586 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
3 Hb_003768_050 0.0719105371 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
4 Hb_001946_340 0.0720184671 - - PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Jatropha curcas]
5 Hb_000069_470 0.0773808534 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
6 Hb_001821_090 0.0776012533 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
7 Hb_000579_230 0.0783127461 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
8 Hb_159558_010 0.0785615017 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
9 Hb_002864_010 0.0786378004 - - PREDICTED: regulator of nonsense transcripts 1 homolog [Jatropha curcas]
10 Hb_001080_230 0.0789579135 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105649979 [Jatropha curcas]
11 Hb_000166_130 0.0801627235 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000656_380 0.0806714508 - - PREDICTED: exportin-T [Jatropha curcas]
13 Hb_002960_080 0.0807827331 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105635322 [Jatropha curcas]
14 Hb_004676_010 0.0809477932 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Jatropha curcas]
15 Hb_009615_170 0.0827946767 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
16 Hb_009476_040 0.0834697611 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001266_100 0.0835671017 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
18 Hb_000590_050 0.0849476185 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
19 Hb_000035_290 0.0852750501 - - RNA recognition motif-containing family protein [Populus trichocarpa]
20 Hb_001614_060 0.0855412021 - - hypothetical protein JCGZ_06918 [Jatropha curcas]

Gene co-expression network

sample Hb_013399_070 Hb_013399_070 Hb_000170_150 Hb_000170_150 Hb_013399_070--Hb_000170_150 Hb_003768_050 Hb_003768_050 Hb_013399_070--Hb_003768_050 Hb_001946_340 Hb_001946_340 Hb_013399_070--Hb_001946_340 Hb_000069_470 Hb_000069_470 Hb_013399_070--Hb_000069_470 Hb_001821_090 Hb_001821_090 Hb_013399_070--Hb_001821_090 Hb_000579_230 Hb_000579_230 Hb_013399_070--Hb_000579_230 Hb_000264_030 Hb_000264_030 Hb_000170_150--Hb_000264_030 Hb_159558_010 Hb_159558_010 Hb_000170_150--Hb_159558_010 Hb_001767_140 Hb_001767_140 Hb_000170_150--Hb_001767_140 Hb_003371_110 Hb_003371_110 Hb_000170_150--Hb_003371_110 Hb_003470_080 Hb_003470_080 Hb_000170_150--Hb_003470_080 Hb_000289_040 Hb_000289_040 Hb_000170_150--Hb_000289_040 Hb_002234_090 Hb_002234_090 Hb_003768_050--Hb_002234_090 Hb_000347_390 Hb_000347_390 Hb_003768_050--Hb_000347_390 Hb_000025_280 Hb_000025_280 Hb_003768_050--Hb_000025_280 Hb_005551_020 Hb_005551_020 Hb_003768_050--Hb_005551_020 Hb_001614_060 Hb_001614_060 Hb_003768_050--Hb_001614_060 Hb_000017_220 Hb_000017_220 Hb_003768_050--Hb_000017_220 Hb_003943_010 Hb_003943_010 Hb_001946_340--Hb_003943_010 Hb_007123_030 Hb_007123_030 Hb_001946_340--Hb_007123_030 Hb_007747_040 Hb_007747_040 Hb_001946_340--Hb_007747_040 Hb_004935_030 Hb_004935_030 Hb_001946_340--Hb_004935_030 Hb_001946_340--Hb_001767_140 Hb_001377_160 Hb_001377_160 Hb_001946_340--Hb_001377_160 Hb_011242_060 Hb_011242_060 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_006117_080 Hb_006117_080 Hb_000069_470--Hb_006117_080 Hb_000069_470--Hb_000025_280 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_000069_410 Hb_000069_410 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_002107_070 Hb_002107_070 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_001821_090--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_009270_020 Hb_009270_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.75034 17.224 5.9513 8.28435 8.06126 15.7789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.5726 7.83192 8.12133 12.8122 10.7295

CAGE analysis