Hb_013399_080

Information

Type -
Description -
Location Contig13399: 56464-61875
Sequence    

Annotation

kegg
ID rcu:RCOM_0653770
description Ran GTPase binding protein, putative
nr
ID XP_012068903.1
description PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
swissprot
ID Q8GYL9
description Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1
trembl
ID A0A067L0K6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24717 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09572: 56752-60161 , PASA_asmbl_09573: 61290-61499
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013399_080 0.0 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
2 Hb_000397_120 0.1603784579 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
3 Hb_000096_080 0.1748907089 - - PREDICTED: putative glycosyltransferase 7 [Jatropha curcas]
4 Hb_000069_710 0.1881179224 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
5 Hb_000207_100 0.1974801251 - - PREDICTED: ABC transporter G family member 25 [Jatropha curcas]
6 Hb_022174_010 0.2019240492 - - elicitor-responsive protein [Hevea brasiliensis]
7 Hb_000943_030 0.2175810036 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007810_100 0.2200487108 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
9 Hb_000684_130 0.2209066865 - - -
10 Hb_002078_160 0.221322779 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
11 Hb_000056_040 0.2294578328 - - PREDICTED: protein IQ-DOMAIN 31 [Jatropha curcas]
12 Hb_000397_100 0.2331343429 - - hypothetical protein 31 [Hevea brasiliensis]
13 Hb_000300_690 0.2364063605 - - hypothetical protein JCGZ_02719 [Jatropha curcas]
14 Hb_007904_210 0.2385696798 - - PREDICTED: oxysterol-binding protein-related protein 1D [Jatropha curcas]
15 Hb_003376_050 0.2408172863 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_007064_040 0.2410431494 - - hypothetical protein RCOM_0254640 [Ricinus communis]
17 Hb_004375_130 0.2418885756 - - kinesin heavy chain, putative [Ricinus communis]
18 Hb_003872_010 0.2433835006 - - hypothetical protein PRUPE_ppa013215mg [Prunus persica]
19 Hb_000556_150 0.2450553218 - - PREDICTED: fasciclin-like arabinogalactan protein 10 [Populus euphratica]
20 Hb_000933_060 0.2463364497 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_013399_080 Hb_013399_080 Hb_000397_120 Hb_000397_120 Hb_013399_080--Hb_000397_120 Hb_000096_080 Hb_000096_080 Hb_013399_080--Hb_000096_080 Hb_000069_710 Hb_000069_710 Hb_013399_080--Hb_000069_710 Hb_000207_100 Hb_000207_100 Hb_013399_080--Hb_000207_100 Hb_022174_010 Hb_022174_010 Hb_013399_080--Hb_022174_010 Hb_000943_030 Hb_000943_030 Hb_013399_080--Hb_000943_030 Hb_007810_100 Hb_007810_100 Hb_000397_120--Hb_007810_100 Hb_000397_120--Hb_000069_710 Hb_003376_050 Hb_003376_050 Hb_000397_120--Hb_003376_050 Hb_000189_510 Hb_000189_510 Hb_000397_120--Hb_000189_510 Hb_000022_200 Hb_000022_200 Hb_000397_120--Hb_000022_200 Hb_000556_150 Hb_000556_150 Hb_000096_080--Hb_000556_150 Hb_004375_130 Hb_004375_130 Hb_000096_080--Hb_004375_130 Hb_000096_080--Hb_000207_100 Hb_002078_160 Hb_002078_160 Hb_000096_080--Hb_002078_160 Hb_007904_210 Hb_007904_210 Hb_000096_080--Hb_007904_210 Hb_000554_010 Hb_000554_010 Hb_000096_080--Hb_000554_010 Hb_001143_190 Hb_001143_190 Hb_000069_710--Hb_001143_190 Hb_000352_120 Hb_000352_120 Hb_000069_710--Hb_000352_120 Hb_001482_040 Hb_001482_040 Hb_000069_710--Hb_001482_040 Hb_000019_150 Hb_000019_150 Hb_000069_710--Hb_000019_150 Hb_000056_040 Hb_000056_040 Hb_000069_710--Hb_000056_040 Hb_001318_200 Hb_001318_200 Hb_000207_100--Hb_001318_200 Hb_000281_110 Hb_000281_110 Hb_000207_100--Hb_000281_110 Hb_000207_100--Hb_000554_010 Hb_000207_100--Hb_002078_160 Hb_000207_100--Hb_000556_150 Hb_000258_150 Hb_000258_150 Hb_022174_010--Hb_000258_150 Hb_000069_670 Hb_000069_670 Hb_022174_010--Hb_000069_670 Hb_022174_010--Hb_000096_080 Hb_145655_010 Hb_145655_010 Hb_022174_010--Hb_145655_010 Hb_022174_010--Hb_000207_100 Hb_000397_100 Hb_000397_100 Hb_000943_030--Hb_000397_100 Hb_003106_010 Hb_003106_010 Hb_000943_030--Hb_003106_010 Hb_005211_160 Hb_005211_160 Hb_000943_030--Hb_005211_160 Hb_000031_030 Hb_000031_030 Hb_000943_030--Hb_000031_030 Hb_000258_080 Hb_000258_080 Hb_000943_030--Hb_000258_080 Hb_002326_050 Hb_002326_050 Hb_000943_030--Hb_002326_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.0819 2.0019 5.59176 16.7792 7.67996 12.2655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.00122 0.924648 15.0161 0.329249 6.06086

CAGE analysis