Hb_013405_040

Information

Type -
Description -
Location Contig13405: 18366-21111
Sequence    

Annotation

kegg
ID rcu:RCOM_1582570
description hypothetical protein
nr
ID XP_002513658.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIT9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582570 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09647: 18151-19797 , PASA_asmbl_09648: 18151-19372 , PASA_asmbl_09650: 19467-19733 , PASA_asmbl_09652: 20596-20693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001633_020 0.1297395687 - - F22C12.10, putative isoform 2 [Theobroma cacao]
3 Hb_001673_010 0.1337739134 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
4 Hb_000866_420 0.1365254172 - - Remorin, putative [Ricinus communis]
5 Hb_001124_080 0.148478094 - - RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
6 Hb_005271_150 0.1603674357 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
7 Hb_003919_010 0.1615157912 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000990_080 0.1626686671 - - gulonolactone oxidase, putative [Ricinus communis]
9 Hb_000023_140 0.1688746673 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
10 Hb_004143_110 0.1689623398 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
11 Hb_006487_050 0.1690599428 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
12 Hb_000031_030 0.1718209502 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
13 Hb_000101_090 0.1721276067 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
14 Hb_000606_080 0.1722702668 - - PREDICTED: RNA-binding protein Nova-2-like [Malus domestica]
15 Hb_009558_020 0.1725456937 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
16 Hb_000258_080 0.1726943477 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
17 Hb_000364_010 0.172951234 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
18 Hb_071736_010 0.175960399 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
19 Hb_012286_050 0.1779738898 - - PREDICTED: syntaxin-61 [Jatropha curcas]
20 Hb_001855_010 0.1781056277 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_013405_040 Hb_013405_040 Hb_001633_020 Hb_001633_020 Hb_013405_040--Hb_001633_020 Hb_001673_010 Hb_001673_010 Hb_013405_040--Hb_001673_010 Hb_000866_420 Hb_000866_420 Hb_013405_040--Hb_000866_420 Hb_001124_080 Hb_001124_080 Hb_013405_040--Hb_001124_080 Hb_005271_150 Hb_005271_150 Hb_013405_040--Hb_005271_150 Hb_003919_010 Hb_003919_010 Hb_013405_040--Hb_003919_010 Hb_002174_050 Hb_002174_050 Hb_001633_020--Hb_002174_050 Hb_001633_020--Hb_001124_080 Hb_001633_020--Hb_001673_010 Hb_001377_180 Hb_001377_180 Hb_001633_020--Hb_001377_180 Hb_004846_200 Hb_004846_200 Hb_001633_020--Hb_004846_200 Hb_071736_010 Hb_071736_010 Hb_001673_010--Hb_071736_010 Hb_000649_050 Hb_000649_050 Hb_001673_010--Hb_000649_050 Hb_001855_010 Hb_001855_010 Hb_001673_010--Hb_001855_010 Hb_005883_050 Hb_005883_050 Hb_001673_010--Hb_005883_050 Hb_003641_050 Hb_003641_050 Hb_001673_010--Hb_003641_050 Hb_000023_140 Hb_000023_140 Hb_001673_010--Hb_000023_140 Hb_001575_040 Hb_001575_040 Hb_000866_420--Hb_001575_040 Hb_002475_050 Hb_002475_050 Hb_000866_420--Hb_002475_050 Hb_007765_010 Hb_007765_010 Hb_000866_420--Hb_007765_010 Hb_000606_080 Hb_000606_080 Hb_000866_420--Hb_000606_080 Hb_000866_420--Hb_001673_010 Hb_001266_080 Hb_001266_080 Hb_001124_080--Hb_001266_080 Hb_000284_110 Hb_000284_110 Hb_001124_080--Hb_000284_110 Hb_001124_080--Hb_071736_010 Hb_004072_020 Hb_004072_020 Hb_001124_080--Hb_004072_020 Hb_004055_140 Hb_004055_140 Hb_001124_080--Hb_004055_140 Hb_002616_050 Hb_002616_050 Hb_001124_080--Hb_002616_050 Hb_012286_050 Hb_012286_050 Hb_005271_150--Hb_012286_050 Hb_000117_010 Hb_000117_010 Hb_005271_150--Hb_000117_010 Hb_020902_010 Hb_020902_010 Hb_005271_150--Hb_020902_010 Hb_001433_220 Hb_001433_220 Hb_005271_150--Hb_001433_220 Hb_000671_100 Hb_000671_100 Hb_005271_150--Hb_000671_100 Hb_000948_190 Hb_000948_190 Hb_003919_010--Hb_000948_190 Hb_000684_230 Hb_000684_230 Hb_003919_010--Hb_000684_230 Hb_000771_100 Hb_000771_100 Hb_003919_010--Hb_000771_100 Hb_023226_010 Hb_023226_010 Hb_003919_010--Hb_023226_010 Hb_000080_060 Hb_000080_060 Hb_003919_010--Hb_000080_060 Hb_000144_090 Hb_000144_090 Hb_003919_010--Hb_000144_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.92395 0.048131 0.99872 2.41615 1.56411 7.39023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16357 1.88595 2.52867 0.564315 0.986852

CAGE analysis