Hb_013405_060

Information

Type -
Description -
Location Contig13405: 31311-32366
Sequence    

Annotation

kegg
ID rcu:RCOM_1582780
description hypothetical protein
nr
ID XP_012090194.1
description PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
swissprot
ID Q6PBM8
description Probable RNA-binding protein 18 OS=Danio rerio GN=rbm18 PE=2 SV=1
trembl
ID A0A067JEG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26067 PE=4 SV=1
Gene Ontology
ID GO:0000166
description probable rna-binding protein 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09654: 29906-31014 , PASA_asmbl_09655: 31064-32239 , PASA_asmbl_09656: 29873-32239 , PASA_asmbl_09657: 29788-32258
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_060 0.0 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
2 Hb_007441_210 0.0684064831 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
3 Hb_008112_040 0.0868711305 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
4 Hb_011381_060 0.0908487362 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
5 Hb_007154_020 0.0978972895 - - -
6 Hb_002868_010 0.1011365699 - - 60S ribosomal protein L30, putative [Ricinus communis]
7 Hb_028841_030 0.1016542847 - - -
8 Hb_000742_140 0.1020383452 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000000_160 0.1038498108 - - PREDICTED: membrin-11 [Jatropha curcas]
10 Hb_004363_010 0.1045968956 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
11 Hb_003939_080 0.1076327353 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004531_070 0.1083506141 - - PREDICTED: cytochrome c oxidase assembly protein COX19-like [Jatropha curcas]
13 Hb_000473_040 0.1090250155 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KIWI-like [Jatropha curcas]
14 Hb_001348_070 0.1091004585 - - Uncharacterized protein isoform 1 [Theobroma cacao]
15 Hb_004787_060 0.1108906031 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
16 Hb_021419_020 0.1111795638 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
17 Hb_017469_020 0.1112992927 - - -
18 Hb_000395_290 0.1117870334 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-8 [Jatropha curcas]
19 Hb_011360_140 0.1126744217 - - 40S ribosomal protein S19, putative [Ricinus communis]
20 Hb_000714_030 0.1147914415 - - Nucleosome assembly [Gossypium arboreum]

Gene co-expression network

sample Hb_013405_060 Hb_013405_060 Hb_007441_210 Hb_007441_210 Hb_013405_060--Hb_007441_210 Hb_008112_040 Hb_008112_040 Hb_013405_060--Hb_008112_040 Hb_011381_060 Hb_011381_060 Hb_013405_060--Hb_011381_060 Hb_007154_020 Hb_007154_020 Hb_013405_060--Hb_007154_020 Hb_002868_010 Hb_002868_010 Hb_013405_060--Hb_002868_010 Hb_028841_030 Hb_028841_030 Hb_013405_060--Hb_028841_030 Hb_007441_210--Hb_028841_030 Hb_004363_010 Hb_004363_010 Hb_007441_210--Hb_004363_010 Hb_021419_020 Hb_021419_020 Hb_007441_210--Hb_021419_020 Hb_000742_140 Hb_000742_140 Hb_007441_210--Hb_000742_140 Hb_000084_290 Hb_000084_290 Hb_007441_210--Hb_000084_290 Hb_008112_040--Hb_007154_020 Hb_008112_040--Hb_004363_010 Hb_000025_230 Hb_000025_230 Hb_008112_040--Hb_000025_230 Hb_008112_040--Hb_028841_030 Hb_003687_230 Hb_003687_230 Hb_008112_040--Hb_003687_230 Hb_011381_060--Hb_007154_020 Hb_145880_030 Hb_145880_030 Hb_011381_060--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_011381_060--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_011381_060--Hb_002374_170 Hb_002045_040 Hb_002045_040 Hb_011381_060--Hb_002045_040 Hb_011381_060--Hb_028841_030 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_001512_060 Hb_001512_060 Hb_007154_020--Hb_001512_060 Hb_005186_050 Hb_005186_050 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_003939_080 Hb_003939_080 Hb_002868_010--Hb_003939_080 Hb_001946_210 Hb_001946_210 Hb_002868_010--Hb_001946_210 Hb_002007_060 Hb_002007_060 Hb_002868_010--Hb_002007_060 Hb_000000_160 Hb_000000_160 Hb_002868_010--Hb_000000_160 Hb_011360_140 Hb_011360_140 Hb_002868_010--Hb_011360_140 Hb_001512_070 Hb_001512_070 Hb_002868_010--Hb_001512_070 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_028841_030--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_028841_030--Hb_003607_150 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4873 14.7868 26.3658 7.699 25.0273 30.3795
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.4276 47.4167 13.7149 4.96935 7.07343

CAGE analysis