Hb_013405_090

Information

Type -
Description -
Location Contig13405: 48019-49349
Sequence    

Annotation

kegg
ID rcu:RCOM_1582820
description hypothetical protein
nr
ID XP_012090204.1
description PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RIU4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1582820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09664: 47901-48210 , PASA_asmbl_09665: 48400-48732 , PASA_asmbl_09666: 48936-49624
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_090 0.0 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
2 Hb_003528_060 0.0755292239 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
3 Hb_001538_120 0.0787059878 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
4 Hb_005322_040 0.082087405 - - 60S ribosomal protein L9, putative [Ricinus communis]
5 Hb_000012_220 0.0946174316 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010261_060 0.0966952271 - - unnamed protein product [Coffea canephora]
7 Hb_129924_010 0.0990633464 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
8 Hb_047823_010 0.101564563 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
9 Hb_004787_060 0.1023212567 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
10 Hb_002259_070 0.1061785382 - - taz protein, putative [Ricinus communis]
11 Hb_003050_080 0.1090647113 - - 40S ribosomal protein S14, putative [Ricinus communis]
12 Hb_012573_070 0.1093912224 - - conserved hypothetical protein [Ricinus communis]
13 Hb_175215_010 0.1100275593 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
14 Hb_002066_070 0.1142196315 - - PREDICTED: uncharacterized protein LOC105631043 [Jatropha curcas]
15 Hb_003734_140 0.1152534123 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001489_060 0.1152834211 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
17 Hb_002006_020 0.1153399321 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
18 Hb_001818_020 0.1157176051 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
19 Hb_003927_140 0.1160320239 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
20 Hb_019253_030 0.1169674304 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-3-like [Citrus sinensis]

Gene co-expression network

sample Hb_013405_090 Hb_013405_090 Hb_003528_060 Hb_003528_060 Hb_013405_090--Hb_003528_060 Hb_001538_120 Hb_001538_120 Hb_013405_090--Hb_001538_120 Hb_005322_040 Hb_005322_040 Hb_013405_090--Hb_005322_040 Hb_000012_220 Hb_000012_220 Hb_013405_090--Hb_000012_220 Hb_010261_060 Hb_010261_060 Hb_013405_090--Hb_010261_060 Hb_129924_010 Hb_129924_010 Hb_013405_090--Hb_129924_010 Hb_012573_070 Hb_012573_070 Hb_003528_060--Hb_012573_070 Hb_003528_060--Hb_001538_120 Hb_003927_140 Hb_003927_140 Hb_003528_060--Hb_003927_140 Hb_182305_020 Hb_182305_020 Hb_003528_060--Hb_182305_020 Hb_001818_020 Hb_001818_020 Hb_003528_060--Hb_001818_020 Hb_000057_070 Hb_000057_070 Hb_001538_120--Hb_000057_070 Hb_000545_150 Hb_000545_150 Hb_001538_120--Hb_000545_150 Hb_001538_120--Hb_012573_070 Hb_001538_120--Hb_001818_020 Hb_004787_060 Hb_004787_060 Hb_005322_040--Hb_004787_060 Hb_005322_040--Hb_000012_220 Hb_010921_010 Hb_010921_010 Hb_005322_040--Hb_010921_010 Hb_011609_100 Hb_011609_100 Hb_005322_040--Hb_011609_100 Hb_001512_060 Hb_001512_060 Hb_005322_040--Hb_001512_060 Hb_000127_180 Hb_000127_180 Hb_000012_220--Hb_000127_180 Hb_000012_220--Hb_003528_060 Hb_003050_080 Hb_003050_080 Hb_000012_220--Hb_003050_080 Hb_000487_250 Hb_000487_250 Hb_000012_220--Hb_000487_250 Hb_002868_010 Hb_002868_010 Hb_000012_220--Hb_002868_010 Hb_002259_070 Hb_002259_070 Hb_010261_060--Hb_002259_070 Hb_019253_030 Hb_019253_030 Hb_010261_060--Hb_019253_030 Hb_010261_060--Hb_003528_060 Hb_010261_060--Hb_001538_120 Hb_000025_530 Hb_000025_530 Hb_010261_060--Hb_000025_530 Hb_010261_060--Hb_001818_020 Hb_129924_010--Hb_002259_070 Hb_129924_010--Hb_001538_120 Hb_129924_010--Hb_003528_060 Hb_003683_110 Hb_003683_110 Hb_129924_010--Hb_003683_110 Hb_012753_230 Hb_012753_230 Hb_129924_010--Hb_012753_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62694 0.598711 1.75138 0.605367 2.708 2.41194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.13872 5.68215 1.7441 1.17316 0.645725

CAGE analysis