Hb_013405_110

Information

Type -
Description -
Location Contig13405: 70560-73363
Sequence    

Annotation

kegg
ID rcu:RCOM_1582850
description multidrug resistance pump, putative
nr
ID XP_002513666.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9RIU7
description MATE efflux family protein OS=Ricinus communis GN=RCOM_1582850 PE=3 SV=1
Gene Ontology
ID GO:0016021
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09668: 70673-70800 , PASA_asmbl_09669: 70812-70968 , PASA_asmbl_09670: 71291-73578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_110 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_003747_090 0.0340094174 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_002785_040 0.0364792839 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
4 Hb_005375_090 0.0386114486 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
5 Hb_002400_200 0.0506294734 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
6 Hb_000703_340 0.0538493928 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
7 Hb_002592_040 0.0550204062 - - ACC oxidase 3 [Hevea brasiliensis]
8 Hb_001936_100 0.0564415629 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000948_240 0.0593204074 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001862_040 0.0599336083 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
11 Hb_004452_070 0.0612967971 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
12 Hb_003020_120 0.0619307054 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
13 Hb_004129_170 0.0628597968 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
14 Hb_086022_020 0.063596684 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
15 Hb_002534_020 0.0636646957 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
16 Hb_000230_420 0.0641660676 - - GS [Hevea brasiliensis subsp. brasiliensis]
17 Hb_082402_020 0.0641757739 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
18 Hb_004899_190 0.0653500149 - - RecName: Full=Peroxiredoxin Q, chloroplastic; AltName: Full=Thioredoxin reductase; Flags: Precursor [Populus x jackii]
19 Hb_002374_480 0.0656708386 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_002890_170 0.065837797 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]

Gene co-expression network

sample Hb_013405_110 Hb_013405_110 Hb_003747_090 Hb_003747_090 Hb_013405_110--Hb_003747_090 Hb_002785_040 Hb_002785_040 Hb_013405_110--Hb_002785_040 Hb_005375_090 Hb_005375_090 Hb_013405_110--Hb_005375_090 Hb_002400_200 Hb_002400_200 Hb_013405_110--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_013405_110--Hb_000703_340 Hb_002592_040 Hb_002592_040 Hb_013405_110--Hb_002592_040 Hb_003747_090--Hb_005375_090 Hb_003747_090--Hb_002785_040 Hb_004129_170 Hb_004129_170 Hb_003747_090--Hb_004129_170 Hb_002890_170 Hb_002890_170 Hb_003747_090--Hb_002890_170 Hb_082402_020 Hb_082402_020 Hb_003747_090--Hb_082402_020 Hb_002785_040--Hb_005375_090 Hb_086022_020 Hb_086022_020 Hb_002785_040--Hb_086022_020 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370 Hb_005375_090--Hb_002890_170 Hb_005375_090--Hb_004129_170 Hb_005375_090--Hb_082402_020 Hb_001936_100 Hb_001936_100 Hb_002400_200--Hb_001936_100 Hb_001053_070 Hb_001053_070 Hb_002400_200--Hb_001053_070 Hb_002374_480 Hb_002374_480 Hb_002400_200--Hb_002374_480 Hb_002400_200--Hb_002890_170 Hb_000373_210 Hb_000373_210 Hb_002400_200--Hb_000373_210 Hb_001049_130 Hb_001049_130 Hb_002400_200--Hb_001049_130 Hb_000703_340--Hb_001936_100 Hb_002014_150 Hb_002014_150 Hb_000703_340--Hb_002014_150 Hb_163566_020 Hb_163566_020 Hb_000703_340--Hb_163566_020 Hb_000703_340--Hb_002400_200 Hb_000139_170 Hb_000139_170 Hb_000703_340--Hb_000139_170 Hb_005743_050 Hb_005743_050 Hb_000703_340--Hb_005743_050 Hb_000948_240 Hb_000948_240 Hb_002592_040--Hb_000948_240 Hb_002592_040--Hb_005375_090 Hb_001006_160 Hb_001006_160 Hb_002592_040--Hb_001006_160 Hb_001862_040 Hb_001862_040 Hb_002592_040--Hb_001862_040 Hb_002592_040--Hb_003747_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.357733 31.5866 11.9617 0 0.0262293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0299862 0.0471828 0 0.0282369 60.2997

CAGE analysis