Hb_013405_130

Information

Type -
Description -
Location Contig13405: 78364-81868
Sequence    

Annotation

kegg
ID pda:103710359
description mediator of RNA polymerase II transcription subunit 36a-like
nr
ID XP_006437601.1
description hypothetical protein CICLE_v10032221mg [Citrus clementina]
swissprot
ID Q9FEF8
description Probable mediator of RNA polymerase II transcription subunit 36b OS=Arabidopsis thaliana GN=MED36B PE=1 SV=1
trembl
ID V4TLZ7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032221mg PE=4 SV=1
Gene Ontology
ID GO:0005730
description probable mediator of rna polymerase ii transcription subunit 36b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09672: 78228-80695 , PASA_asmbl_09673: 82830-86215
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_130 0.0 - - hypothetical protein CICLE_v10032221mg [Citrus clementina]
2 Hb_000085_280 0.0782917802 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
3 Hb_010261_020 0.0886146376 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
4 Hb_005288_120 0.1006140279 - - PREDICTED: uncharacterized protein LOC105647751 [Jatropha curcas]
5 Hb_000186_010 0.102393131 - - PREDICTED: EH domain-containing protein 1 [Jatropha curcas]
6 Hb_000042_230 0.1064312063 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
7 Hb_000028_030 0.106607331 - - amidase, putative [Ricinus communis]
8 Hb_035524_030 0.1075239877 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010298_010 0.1078824375 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
10 Hb_003813_100 0.1110686622 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
11 Hb_118301_010 0.115487536 - - Endoribonuclease Dicer-1-like protein [Morus notabilis]
12 Hb_004242_100 0.1201174744 - - RNA binding protein, putative [Ricinus communis]
13 Hb_002290_060 0.1212760897 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
14 Hb_009558_020 0.1217472974 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
15 Hb_000671_100 0.122752433 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
16 Hb_000705_260 0.1231530153 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003453_010 0.1305239254 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003050_040 0.1325112873 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
19 Hb_000017_340 0.1346142544 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
20 Hb_077219_010 0.1356103416 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_013405_130 Hb_013405_130 Hb_000085_280 Hb_000085_280 Hb_013405_130--Hb_000085_280 Hb_010261_020 Hb_010261_020 Hb_013405_130--Hb_010261_020 Hb_005288_120 Hb_005288_120 Hb_013405_130--Hb_005288_120 Hb_000186_010 Hb_000186_010 Hb_013405_130--Hb_000186_010 Hb_000042_230 Hb_000042_230 Hb_013405_130--Hb_000042_230 Hb_000028_030 Hb_000028_030 Hb_013405_130--Hb_000028_030 Hb_035524_030 Hb_035524_030 Hb_000085_280--Hb_035524_030 Hb_002290_060 Hb_002290_060 Hb_000085_280--Hb_002290_060 Hb_000085_280--Hb_005288_120 Hb_019613_020 Hb_019613_020 Hb_000085_280--Hb_019613_020 Hb_000085_280--Hb_000186_010 Hb_010261_020--Hb_005288_120 Hb_010298_010 Hb_010298_010 Hb_010261_020--Hb_010298_010 Hb_009558_020 Hb_009558_020 Hb_010261_020--Hb_009558_020 Hb_000671_100 Hb_000671_100 Hb_010261_020--Hb_000671_100 Hb_000700_090 Hb_000700_090 Hb_010261_020--Hb_000700_090 Hb_005288_120--Hb_035524_030 Hb_000017_340 Hb_000017_340 Hb_005288_120--Hb_000017_340 Hb_002014_080 Hb_002014_080 Hb_005288_120--Hb_002014_080 Hb_005288_120--Hb_000671_100 Hb_000186_010--Hb_000042_230 Hb_000028_050 Hb_000028_050 Hb_000186_010--Hb_000028_050 Hb_000186_010--Hb_005288_120 Hb_001252_170 Hb_001252_170 Hb_000186_010--Hb_001252_170 Hb_000042_230--Hb_000028_030 Hb_000152_740 Hb_000152_740 Hb_000042_230--Hb_000152_740 Hb_000042_230--Hb_000017_340 Hb_000042_230--Hb_005288_120 Hb_000028_030--Hb_000017_340 Hb_003602_040 Hb_003602_040 Hb_000028_030--Hb_003602_040 Hb_009118_010 Hb_009118_010 Hb_000028_030--Hb_009118_010 Hb_000028_030--Hb_000152_740 Hb_000028_030--Hb_005288_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.6613 8.43455 3.65825 8.52926 65.7919 143.517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.7528 25.9731 38.1763 21.6308 16.3668

CAGE analysis