Hb_013405_140

Information

Type -
Description -
Location Contig13405: 82819-86230
Sequence    

Annotation

kegg
ID rcu:RCOM_1582880
description ribosomal protein S9, putative
nr
ID XP_012090210.1
description PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
swissprot
ID A9IVX6
description 30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsI PE=3 SV=1
trembl
ID A0A067JQJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26076 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09673: 82830-86215 , PASA_asmbl_09674: 84026-84315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_140 0.0 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
2 Hb_002016_080 0.062977735 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
3 Hb_011485_020 0.0639779618 - - protein with unknown function [Ricinus communis]
4 Hb_000673_020 0.064169875 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
5 Hb_007037_020 0.0690643723 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
6 Hb_003783_030 0.0726884755 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
7 Hb_011021_040 0.0806049052 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
8 Hb_000111_450 0.0823317937 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
9 Hb_013399_050 0.086626438 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
10 Hb_003880_030 0.0883400112 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
11 Hb_001776_160 0.092109492 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
12 Hb_000327_060 0.0969425633 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
13 Hb_001172_120 0.0977414913 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
14 Hb_002742_090 0.0980948594 - - PREDICTED: putative glucose-6-phosphate 1-epimerase [Jatropha curcas]
15 Hb_005656_100 0.1000314038 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000424_200 0.1001714983 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
17 Hb_000175_030 0.1005554316 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
18 Hb_000934_190 0.1033181211 - - SER/ARG-rich protein 34A [Theobroma cacao]
19 Hb_002284_200 0.1061819475 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
20 Hb_007192_100 0.1064843988 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]

Gene co-expression network

sample Hb_013405_140 Hb_013405_140 Hb_002016_080 Hb_002016_080 Hb_013405_140--Hb_002016_080 Hb_011485_020 Hb_011485_020 Hb_013405_140--Hb_011485_020 Hb_000673_020 Hb_000673_020 Hb_013405_140--Hb_000673_020 Hb_007037_020 Hb_007037_020 Hb_013405_140--Hb_007037_020 Hb_003783_030 Hb_003783_030 Hb_013405_140--Hb_003783_030 Hb_011021_040 Hb_011021_040 Hb_013405_140--Hb_011021_040 Hb_002016_080--Hb_011485_020 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_002016_080--Hb_000673_020 Hb_000413_280 Hb_000413_280 Hb_002016_080--Hb_000413_280 Hb_002016_080--Hb_003783_030 Hb_000436_030 Hb_000436_030 Hb_011485_020--Hb_000436_030 Hb_000479_160 Hb_000479_160 Hb_011485_020--Hb_000479_160 Hb_001053_140 Hb_001053_140 Hb_011485_020--Hb_001053_140 Hb_011485_020--Hb_007037_020 Hb_003880_030 Hb_003880_030 Hb_000673_020--Hb_003880_030 Hb_000175_030 Hb_000175_030 Hb_000673_020--Hb_000175_030 Hb_027654_050 Hb_027654_050 Hb_000673_020--Hb_027654_050 Hb_000934_190 Hb_000934_190 Hb_000673_020--Hb_000934_190 Hb_007037_020--Hb_011021_040 Hb_001172_120 Hb_001172_120 Hb_007037_020--Hb_001172_120 Hb_013399_050 Hb_013399_050 Hb_007037_020--Hb_013399_050 Hb_007037_020--Hb_002016_080 Hb_003783_030--Hb_007037_020 Hb_003783_030--Hb_000673_020 Hb_001481_140 Hb_001481_140 Hb_003783_030--Hb_001481_140 Hb_003462_120 Hb_003462_120 Hb_003783_030--Hb_003462_120 Hb_011021_040--Hb_013399_050 Hb_011021_040--Hb_000175_030 Hb_011021_040--Hb_002016_080 Hb_011021_040--Hb_001172_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4358 12.2624 16.9743 21.0922 7.34984 9.34138
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.9483 62.5819 51.2231 25.7622 23.2864

CAGE analysis