Hb_013405_170

Information

Type -
Description -
Location Contig13405: 105393-107546
Sequence    

Annotation

kegg
ID pop:POPTR_0015s12830g
description POPTRDRAFT_734212; HCF106 family protein
nr
ID XP_012090212.1
description PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
swissprot
ID Q9XH75
description Sec-independent protein translocase protein TATB, chloroplastic OS=Arabidopsis thaliana GN=TATB PE=1 SV=1
trembl
ID A9PET0
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005886
description hcf106 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09677: 106837-107038
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_170 0.0 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
2 Hb_000123_080 0.0006495565 transcription factor TF Family: B3 hypothetical protein VITISV_040593 [Vitis vinifera]
3 Hb_005743_040 0.0008622013 - - JHL22C18.10 [Jatropha curcas]
4 Hb_000378_020 0.001719796 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
5 Hb_004117_220 0.0019623551 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
6 Hb_021281_010 0.005497678 - - Major latex protein, putative [Ricinus communis]
7 Hb_001882_120 0.0065385444 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
8 Hb_008887_060 0.0079078198 - - PREDICTED: disease resistance protein RPS6-like isoform X1 [Jatropha curcas]
9 Hb_000101_110 0.0126058072 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_043777_010 0.0151040955 - - conserved hypothetical protein [Ricinus communis]
11 Hb_138485_010 0.0173463964 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
12 Hb_003891_020 0.0202752989 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
13 Hb_001279_060 0.0207947881 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
14 Hb_007407_020 0.0251531196 - - ATP binding protein, putative [Ricinus communis]
15 Hb_086720_010 0.0262119136 - - CTV.19 [Citrus trifoliata]
16 Hb_002759_210 0.0272690702 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
17 Hb_000295_140 0.028751733 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
18 Hb_000012_360 0.0291003565 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
19 Hb_032907_020 0.0295806292 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_000272_060 0.0300223559 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_013405_170 Hb_013405_170 Hb_000123_080 Hb_000123_080 Hb_013405_170--Hb_000123_080 Hb_005743_040 Hb_005743_040 Hb_013405_170--Hb_005743_040 Hb_000378_020 Hb_000378_020 Hb_013405_170--Hb_000378_020 Hb_004117_220 Hb_004117_220 Hb_013405_170--Hb_004117_220 Hb_021281_010 Hb_021281_010 Hb_013405_170--Hb_021281_010 Hb_001882_120 Hb_001882_120 Hb_013405_170--Hb_001882_120 Hb_000123_080--Hb_000378_020 Hb_000123_080--Hb_004117_220 Hb_000123_080--Hb_005743_040 Hb_000123_080--Hb_021281_010 Hb_000123_080--Hb_001882_120 Hb_005743_040--Hb_000378_020 Hb_005743_040--Hb_004117_220 Hb_005743_040--Hb_021281_010 Hb_005743_040--Hb_001882_120 Hb_000378_020--Hb_004117_220 Hb_008887_060 Hb_008887_060 Hb_000378_020--Hb_008887_060 Hb_000378_020--Hb_021281_010 Hb_004117_220--Hb_008887_060 Hb_004117_220--Hb_021281_010 Hb_021281_010--Hb_001882_120 Hb_000101_110 Hb_000101_110 Hb_021281_010--Hb_000101_110 Hb_001882_120--Hb_000101_110 Hb_001882_120--Hb_000378_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.104513 0.134681 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis