Hb_013405_240

Information

Type -
Description -
Location Contig13405: 166285-168703
Sequence    

Annotation

kegg
ID tcc:TCM_015213
description Hydroxyproline-rich glycoprotein family protein
nr
ID XP_007038760.1
description Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061G123
description Hydroxyproline-rich glycoprotein family protein OS=Theobroma cacao GN=TCM_015213 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013405_240 0.0 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
2 Hb_007416_250 0.0040268453 - - -
3 Hb_013818_020 0.0282211863 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
4 Hb_000282_110 0.03224312 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
5 Hb_000243_190 0.0347916922 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
6 Hb_000029_150 0.0451655622 - - conserved hypothetical protein [Ricinus communis]
7 Hb_016334_010 0.0508098637 - - hypothetical protein JCGZ_01311 [Jatropha curcas]
8 Hb_000762_050 0.0515749133 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
9 Hb_003208_010 0.0571477053 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
10 Hb_000003_530 0.0638041278 - - PREDICTED: uncharacterized protein LOC105631554 [Jatropha curcas]
11 Hb_004116_030 0.0642008514 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
12 Hb_101097_010 0.0648303732 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_132840_050 0.0650215261 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
14 Hb_000940_060 0.0651750097 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
15 Hb_158597_010 0.0657474448 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
16 Hb_005736_030 0.0682939944 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
17 Hb_003251_010 0.0698030927 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
18 Hb_005483_050 0.0726283394 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000398_110 0.0749745012 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
20 Hb_001089_120 0.0754457666 - - PREDICTED: pectinesterase [Jatropha curcas]

Gene co-expression network

sample Hb_013405_240 Hb_013405_240 Hb_007416_250 Hb_007416_250 Hb_013405_240--Hb_007416_250 Hb_013818_020 Hb_013818_020 Hb_013405_240--Hb_013818_020 Hb_000282_110 Hb_000282_110 Hb_013405_240--Hb_000282_110 Hb_000243_190 Hb_000243_190 Hb_013405_240--Hb_000243_190 Hb_000029_150 Hb_000029_150 Hb_013405_240--Hb_000029_150 Hb_016334_010 Hb_016334_010 Hb_013405_240--Hb_016334_010 Hb_007416_250--Hb_013818_020 Hb_007416_250--Hb_000282_110 Hb_007416_250--Hb_000243_190 Hb_007416_250--Hb_000029_150 Hb_000762_050 Hb_000762_050 Hb_007416_250--Hb_000762_050 Hb_013818_020--Hb_000282_110 Hb_013818_020--Hb_000762_050 Hb_000003_530 Hb_000003_530 Hb_013818_020--Hb_000003_530 Hb_003208_010 Hb_003208_010 Hb_013818_020--Hb_003208_010 Hb_000282_110--Hb_003208_010 Hb_000282_110--Hb_000762_050 Hb_003251_010 Hb_003251_010 Hb_000282_110--Hb_003251_010 Hb_132840_050 Hb_132840_050 Hb_000243_190--Hb_132840_050 Hb_000940_060 Hb_000940_060 Hb_000243_190--Hb_000940_060 Hb_000243_190--Hb_016334_010 Hb_000243_190--Hb_000029_150 Hb_005736_030 Hb_005736_030 Hb_000029_150--Hb_005736_030 Hb_000029_150--Hb_132840_050 Hb_000029_150--Hb_013818_020 Hb_016334_010--Hb_000762_050 Hb_016334_010--Hb_000003_530 Hb_004116_030 Hb_004116_030 Hb_016334_010--Hb_004116_030 Hb_016334_010--Hb_132840_050 Hb_008725_280 Hb_008725_280 Hb_016334_010--Hb_008725_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0239657 0.0122922 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.113914

CAGE analysis