Hb_013407_010

Information

Type -
Description -
Location Contig13407: 5888-6184
Sequence    

Annotation

kegg
ID pop:POPTR_0013s04710g
description hypothetical protein
nr
ID KDP23742.1
description hypothetical protein JCGZ_23575 [Jatropha curcas]
swissprot
ID O04161
description Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1
trembl
ID A0A067JIR6
description Ammonium transporter OS=Jatropha curcas GN=JCGZ_23575 PE=3 SV=1
Gene Ontology
ID GO:0016021
description amt1 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013407_010 0.0 - - hypothetical protein JCGZ_23575 [Jatropha curcas]
2 Hb_005827_020 0.115423042 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
3 Hb_001817_110 0.1176026738 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
4 Hb_002837_080 0.1190318433 - - acyltransferase, putative [Ricinus communis]
5 Hb_043127_010 0.119820079 - - PREDICTED: uncharacterized protein LOC105648822 [Jatropha curcas]
6 Hb_001709_080 0.1277546887 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_000311_100 0.1422831026 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000328_030 0.1448650167 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
9 Hb_082972_010 0.1462080592 - - -
10 Hb_042083_010 0.1500916014 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
11 Hb_001377_230 0.1501339697 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
12 Hb_000020_180 0.1565393943 - - laccase, putative [Ricinus communis]
13 Hb_006483_020 0.1602098125 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
14 Hb_001366_360 0.1611934881 - - catalytic, putative [Ricinus communis]
15 Hb_000012_380 0.1612434491 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
16 Hb_006065_030 0.1621413414 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
17 Hb_000165_260 0.1638066896 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
18 Hb_007227_030 0.1642430753 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
19 Hb_002739_140 0.1666902681 - - PREDICTED: protein TPX2 [Jatropha curcas]
20 Hb_031284_060 0.1670670354 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]

Gene co-expression network

sample Hb_013407_010 Hb_013407_010 Hb_005827_020 Hb_005827_020 Hb_013407_010--Hb_005827_020 Hb_001817_110 Hb_001817_110 Hb_013407_010--Hb_001817_110 Hb_002837_080 Hb_002837_080 Hb_013407_010--Hb_002837_080 Hb_043127_010 Hb_043127_010 Hb_013407_010--Hb_043127_010 Hb_001709_080 Hb_001709_080 Hb_013407_010--Hb_001709_080 Hb_000311_100 Hb_000311_100 Hb_013407_010--Hb_000311_100 Hb_005827_020--Hb_000311_100 Hb_000020_180 Hb_000020_180 Hb_005827_020--Hb_000020_180 Hb_008001_030 Hb_008001_030 Hb_005827_020--Hb_008001_030 Hb_000462_040 Hb_000462_040 Hb_005827_020--Hb_000462_040 Hb_001712_030 Hb_001712_030 Hb_005827_020--Hb_001712_030 Hb_000328_030 Hb_000328_030 Hb_005827_020--Hb_000328_030 Hb_082972_010 Hb_082972_010 Hb_001817_110--Hb_082972_010 Hb_001817_110--Hb_043127_010 Hb_001817_110--Hb_002837_080 Hb_002060_070 Hb_002060_070 Hb_001817_110--Hb_002060_070 Hb_012691_060 Hb_012691_060 Hb_001817_110--Hb_012691_060 Hb_002837_080--Hb_082972_010 Hb_002837_080--Hb_002060_070 Hb_002837_080--Hb_043127_010 Hb_009492_020 Hb_009492_020 Hb_002837_080--Hb_009492_020 Hb_043127_010--Hb_082972_010 Hb_043127_010--Hb_002060_070 Hb_043127_010--Hb_012691_060 Hb_000009_250 Hb_000009_250 Hb_001709_080--Hb_000009_250 Hb_042083_010 Hb_042083_010 Hb_001709_080--Hb_042083_010 Hb_000245_110 Hb_000245_110 Hb_001709_080--Hb_000245_110 Hb_000012_380 Hb_000012_380 Hb_001709_080--Hb_000012_380 Hb_000368_040 Hb_000368_040 Hb_001709_080--Hb_000368_040 Hb_001709_080--Hb_005827_020 Hb_000165_260 Hb_000165_260 Hb_000311_100--Hb_000165_260 Hb_000311_100--Hb_001712_030 Hb_000311_100--Hb_000328_030 Hb_000311_100--Hb_008001_030 Hb_003090_190 Hb_003090_190 Hb_000311_100--Hb_003090_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.186274 0 1.08422 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.928707

CAGE analysis