Hb_013420_040

Information

Type -
Description -
Location Contig13420: 8506-8805
Sequence    

Annotation

kegg
ID -
description -
nr
ID CBI31106.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A0A0E0DVR6
description Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09720: 7827-8507 , PASA_asmbl_09721: 8704-10328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013420_040 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_121041_010 0.2061736814 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
3 Hb_042463_020 0.2085424466 - - conserved hypothetical protein [Ricinus communis]
4 Hb_158203_010 0.2086748482 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_171685_020 0.2238996734 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006474_010 0.2264909979 - - hypothetical protein VITISV_032357 [Vitis vinifera]
7 Hb_170559_010 0.2288525027 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_183191_020 0.2298907847 - - conserved hypothetical protein [Ricinus communis]
9 Hb_062273_010 0.2303656378 - - ATP synthase F0 subunit 9 [Chara vulgaris]
10 Hb_027357_010 0.2314350723 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_072212_020 0.2318964598 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
12 Hb_013420_090 0.2320678644 - - BnaCnng13090D [Brassica napus]
13 Hb_002687_070 0.2329330942 - - polyprotein [Ananas comosus]
14 Hb_000518_040 0.234350793 - - -
15 Hb_000268_100 0.2383975965 - - -
16 Hb_156746_010 0.2394088716 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
17 Hb_062192_060 0.2400210725 - - maturase (mitochondrion) [Hevea brasiliensis]
18 Hb_008305_010 0.2407155165 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003362_020 0.2444186825 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
20 Hb_034168_070 0.2453411741 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_013420_040 Hb_013420_040 Hb_121041_010 Hb_121041_010 Hb_013420_040--Hb_121041_010 Hb_042463_020 Hb_042463_020 Hb_013420_040--Hb_042463_020 Hb_158203_010 Hb_158203_010 Hb_013420_040--Hb_158203_010 Hb_171685_020 Hb_171685_020 Hb_013420_040--Hb_171685_020 Hb_006474_010 Hb_006474_010 Hb_013420_040--Hb_006474_010 Hb_170559_010 Hb_170559_010 Hb_013420_040--Hb_170559_010 Hb_121041_010--Hb_158203_010 Hb_003739_040 Hb_003739_040 Hb_121041_010--Hb_003739_040 Hb_003567_020 Hb_003567_020 Hb_121041_010--Hb_003567_020 Hb_180367_010 Hb_180367_010 Hb_121041_010--Hb_180367_010 Hb_054127_020 Hb_054127_020 Hb_121041_010--Hb_054127_020 Hb_121041_010--Hb_006474_010 Hb_034168_070 Hb_034168_070 Hb_042463_020--Hb_034168_070 Hb_156746_010 Hb_156746_010 Hb_042463_020--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_042463_020--Hb_012163_050 Hb_104735_020 Hb_104735_020 Hb_042463_020--Hb_104735_020 Hb_062273_010 Hb_062273_010 Hb_042463_020--Hb_062273_010 Hb_042463_070 Hb_042463_070 Hb_042463_020--Hb_042463_070 Hb_056095_010 Hb_056095_010 Hb_158203_010--Hb_056095_010 Hb_158203_010--Hb_180367_010 Hb_158203_010--Hb_003567_020 Hb_004445_030 Hb_004445_030 Hb_158203_010--Hb_004445_030 Hb_158203_010--Hb_054127_020 Hb_002687_070 Hb_002687_070 Hb_171685_020--Hb_002687_070 Hb_006040_050 Hb_006040_050 Hb_171685_020--Hb_006040_050 Hb_013420_120 Hb_013420_120 Hb_171685_020--Hb_013420_120 Hb_013420_090 Hb_013420_090 Hb_171685_020--Hb_013420_090 Hb_171685_040 Hb_171685_040 Hb_171685_020--Hb_171685_040 Hb_013420_010 Hb_013420_010 Hb_171685_020--Hb_013420_010 Hb_006474_010--Hb_003567_020 Hb_006474_010--Hb_180367_010 Hb_006474_010--Hb_003739_040 Hb_006474_010--Hb_042463_070 Hb_006474_010--Hb_158203_010 Hb_003406_030 Hb_003406_030 Hb_170559_010--Hb_003406_030 Hb_170559_010--Hb_171685_020 Hb_003362_020 Hb_003362_020 Hb_170559_010--Hb_003362_020 Hb_170156_010 Hb_170156_010 Hb_170559_010--Hb_170156_010 Hb_170559_010--Hb_002687_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.47263 0.83654 0 0 0 0.299199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.419256 0.68422 7.28372

CAGE analysis