Hb_013420_060

Information

Type -
Description -
Location Contig13420: 11891-12103
Sequence    

Annotation

kegg
ID csv:101232354
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 2-like
nr
ID AAW63685.1
description NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
swissprot
ID -
description -
trembl
ID Q5G6S6
description NADH dehydrogenase subunit 7 (Fragment) OS=Nymphaea sp. Bergthorsson 0401 GN=nad7 PE=4 SV=1
Gene Ontology
ID GO:0016651
description nadh dehydrogenase subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09722: 10818-11724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013420_060 0.0 - - NADH dehydrogenase subunit 7 [Nymphaea sp. Bergthorsson 0401]
2 Hb_000574_330 0.1622418069 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
3 Hb_004712_200 0.1632507968 - - hypothetical protein CICLE_v10010292mg [Citrus clementina]
4 Hb_003333_040 0.1652833146 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_032733_020 0.1655075408 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
6 Hb_011900_020 0.1662246905 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
7 Hb_000029_380 0.1695439553 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004374_090 0.1748200509 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
9 Hb_041813_040 0.1767378722 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
10 Hb_127552_050 0.1771435452 - - hypothetical protein VITISV_030752 [Vitis vinifera]
11 Hb_041813_090 0.1771798502 - - hypothetical protein EUGRSUZ_J01097 [Eucalyptus grandis]
12 Hb_003944_010 0.1774744172 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_002835_090 0.1781218349 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
14 Hb_000011_440 0.178908303 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
15 Hb_005779_090 0.181969253 transcription factor TF Family: ERF hypothetical protein POPTR_0014s05500g [Populus trichocarpa]
16 Hb_002798_080 0.1858118872 - - hypothetical protein VITISV_043745 [Vitis vinifera]
17 Hb_001377_060 0.1859326981 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
18 Hb_156850_020 0.1865301605 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
19 Hb_000360_010 0.1869016421 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_168031_020 0.1872739844 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_013420_060 Hb_013420_060 Hb_000574_330 Hb_000574_330 Hb_013420_060--Hb_000574_330 Hb_004712_200 Hb_004712_200 Hb_013420_060--Hb_004712_200 Hb_003333_040 Hb_003333_040 Hb_013420_060--Hb_003333_040 Hb_032733_020 Hb_032733_020 Hb_013420_060--Hb_032733_020 Hb_011900_020 Hb_011900_020 Hb_013420_060--Hb_011900_020 Hb_000029_380 Hb_000029_380 Hb_013420_060--Hb_000029_380 Hb_041813_040 Hb_041813_040 Hb_000574_330--Hb_041813_040 Hb_127552_050 Hb_127552_050 Hb_000574_330--Hb_127552_050 Hb_011649_030 Hb_011649_030 Hb_000574_330--Hb_011649_030 Hb_001385_070 Hb_001385_070 Hb_000574_330--Hb_001385_070 Hb_000123_340 Hb_000123_340 Hb_000574_330--Hb_000123_340 Hb_004109_130 Hb_004109_130 Hb_000574_330--Hb_004109_130 Hb_000966_040 Hb_000966_040 Hb_004712_200--Hb_000966_040 Hb_001377_060 Hb_001377_060 Hb_004712_200--Hb_001377_060 Hb_000975_050 Hb_000975_050 Hb_004712_200--Hb_000975_050 Hb_001266_160 Hb_001266_160 Hb_004712_200--Hb_001266_160 Hb_009692_040 Hb_009692_040 Hb_004712_200--Hb_009692_040 Hb_000193_220 Hb_000193_220 Hb_004712_200--Hb_000193_220 Hb_001671_090 Hb_001671_090 Hb_003333_040--Hb_001671_090 Hb_007413_030 Hb_007413_030 Hb_003333_040--Hb_007413_030 Hb_003333_040--Hb_032733_020 Hb_053998_020 Hb_053998_020 Hb_003333_040--Hb_053998_020 Hb_114271_010 Hb_114271_010 Hb_003333_040--Hb_114271_010 Hb_032733_020--Hb_114271_010 Hb_087797_010 Hb_087797_010 Hb_032733_020--Hb_087797_010 Hb_001691_170 Hb_001691_170 Hb_032733_020--Hb_001691_170 Hb_002005_050 Hb_002005_050 Hb_032733_020--Hb_002005_050 Hb_156850_020 Hb_156850_020 Hb_011900_020--Hb_156850_020 Hb_000359_070 Hb_000359_070 Hb_011900_020--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_011900_020--Hb_000360_010 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_010080_070 Hb_010080_070 Hb_011900_020--Hb_010080_070 Hb_002835_090 Hb_002835_090 Hb_011900_020--Hb_002835_090 Hb_012940_020 Hb_012940_020 Hb_000029_380--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_000029_380--Hb_068804_110 Hb_005228_060 Hb_005228_060 Hb_000029_380--Hb_005228_060 Hb_000029_380--Hb_156850_020 Hb_185274_020 Hb_185274_020 Hb_000029_380--Hb_185274_020 Hb_007595_050 Hb_007595_050 Hb_000029_380--Hb_007595_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.23303 5.63139 8.84617 7.05853 0.616857 0.680998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.01238 3.77406 51.813

CAGE analysis