Hb_013420_120

Information

Type -
Description -
Location Contig13420: 30172-31639
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09725: 31598-31955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013420_120 0.0 - - -
2 Hb_151320_010 0.1533656728 - - -
3 Hb_171685_020 0.1579486554 - - conserved hypothetical protein [Ricinus communis]
4 Hb_013420_010 0.1846432675 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006040_050 0.1871069302 - - conserved hypothetical protein [Ricinus communis]
6 Hb_171685_040 0.1923067077 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
7 Hb_027357_010 0.2209434805 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_170973_010 0.2255773772 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
9 Hb_009268_030 0.2256176477 - - ribosomal protein S7 [Piper cenocladum]
10 Hb_005742_010 0.2328376386 - - hypothetical protein, partial [Pseudomonas fluorescens]
11 Hb_001124_170 0.2426085525 - - putative retrotransposon protein [Phyllostachys edulis]
12 Hb_012163_050 0.2429932102 - - ATPase subunit [Medicago truncatula]
13 Hb_002495_050 0.2435909031 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
14 Hb_021374_020 0.2479180919 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
15 Hb_013420_090 0.2516794526 - - BnaCnng13090D [Brassica napus]
16 Hb_002687_070 0.253543523 - - polyprotein [Ananas comosus]
17 Hb_013420_020 0.2546577657 - - conserved hypothetical protein [Ricinus communis]
18 Hb_171685_060 0.2562486739 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
19 Hb_042463_020 0.2574705909 - - conserved hypothetical protein [Ricinus communis]
20 Hb_141425_010 0.26095065 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_013420_120 Hb_013420_120 Hb_151320_010 Hb_151320_010 Hb_013420_120--Hb_151320_010 Hb_171685_020 Hb_171685_020 Hb_013420_120--Hb_171685_020 Hb_013420_010 Hb_013420_010 Hb_013420_120--Hb_013420_010 Hb_006040_050 Hb_006040_050 Hb_013420_120--Hb_006040_050 Hb_171685_040 Hb_171685_040 Hb_013420_120--Hb_171685_040 Hb_027357_010 Hb_027357_010 Hb_013420_120--Hb_027357_010 Hb_004195_220 Hb_004195_220 Hb_151320_010--Hb_004195_220 Hb_000987_110 Hb_000987_110 Hb_151320_010--Hb_000987_110 Hb_141425_010 Hb_141425_010 Hb_151320_010--Hb_141425_010 Hb_123396_010 Hb_123396_010 Hb_151320_010--Hb_123396_010 Hb_005742_010 Hb_005742_010 Hb_151320_010--Hb_005742_010 Hb_002687_070 Hb_002687_070 Hb_171685_020--Hb_002687_070 Hb_171685_020--Hb_006040_050 Hb_013420_090 Hb_013420_090 Hb_171685_020--Hb_013420_090 Hb_171685_020--Hb_171685_040 Hb_171685_020--Hb_013420_010 Hb_013420_010--Hb_027357_010 Hb_042463_020 Hb_042463_020 Hb_013420_010--Hb_042463_020 Hb_013420_010--Hb_171685_040 Hb_072212_020 Hb_072212_020 Hb_013420_010--Hb_072212_020 Hb_034168_070 Hb_034168_070 Hb_013420_010--Hb_034168_070 Hb_012163_050 Hb_012163_050 Hb_013420_010--Hb_012163_050 Hb_006040_050--Hb_005742_010 Hb_006040_050--Hb_171685_040 Hb_006040_050--Hb_002687_070 Hb_002482_050 Hb_002482_050 Hb_006040_050--Hb_002482_050 Hb_102602_030 Hb_102602_030 Hb_171685_040--Hb_102602_030 Hb_171685_040--Hb_027357_010 Hb_171685_040--Hb_072212_020 Hb_171685_040--Hb_005742_010 Hb_013420_020 Hb_013420_020 Hb_027357_010--Hb_013420_020 Hb_156746_010 Hb_156746_010 Hb_027357_010--Hb_156746_010 Hb_027357_010--Hb_012163_050 Hb_041813_030 Hb_041813_030 Hb_027357_010--Hb_041813_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.174556 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.28623 0 1.56786

CAGE analysis