Hb_013429_020

Information

Type -
Description -
Location Contig13429: 48292-61871
Sequence    

Annotation

kegg
ID rcu:RCOM_0174710
description prolyl 4-hydroxylase alpha subunit, putative (EC:1.14.11.2)
nr
ID XP_002527486.1
description prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
swissprot
ID Q8VZJ7
description Probable prolyl 4-hydroxylase 9 OS=Arabidopsis thaliana GN=P4H9 PE=2 SV=1
trembl
ID B9SNB7
description Prolyl 4-hydroxylase alpha subunit, putative OS=Ricinus communis GN=RCOM_0174710 PE=4 SV=1
Gene Ontology
ID GO:0005794
description probable prolyl 4-hydroxylase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013429_020 0.0 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
2 Hb_020580_010 0.0818124226 - - -
3 Hb_003321_020 0.18807674 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
4 Hb_003117_040 0.2222282824 - - cytochrome P450, putative [Ricinus communis]
5 Hb_010142_080 0.2237769299 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
6 Hb_009421_010 0.2239832233 - - -
7 Hb_021616_010 0.2276286925 - - -
8 Hb_004157_110 0.2306412448 - - -
9 Hb_001638_220 0.2630728543 - - conserved hypothetical protein [Ricinus communis]
10 Hb_183612_030 0.2641728061 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
11 Hb_008370_010 0.2708691415 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_004413_030 0.283871038 - - Retrotransposon protein, putative [Theobroma cacao]
13 Hb_025457_010 0.2915192011 - - -
14 Hb_032299_060 0.2966930923 - - PREDICTED: protein UPSTREAM OF FLC-like [Elaeis guineensis]
15 Hb_184403_010 0.3028699522 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Gossypium raimondii]
16 Hb_028486_070 0.3043858981 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
17 Hb_174876_010 0.3084319941 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
18 Hb_054362_010 0.3139938134 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
19 Hb_127993_010 0.3142336847 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
20 Hb_169574_010 0.3194005095 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_013429_020 Hb_013429_020 Hb_020580_010 Hb_020580_010 Hb_013429_020--Hb_020580_010 Hb_003321_020 Hb_003321_020 Hb_013429_020--Hb_003321_020 Hb_003117_040 Hb_003117_040 Hb_013429_020--Hb_003117_040 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_009421_010 Hb_009421_010 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010 Hb_001638_220 Hb_001638_220 Hb_020580_010--Hb_001638_220 Hb_020580_010--Hb_003321_020 Hb_020580_010--Hb_003117_040 Hb_004157_110 Hb_004157_110 Hb_020580_010--Hb_004157_110 Hb_020580_010--Hb_009421_010 Hb_183612_030 Hb_183612_030 Hb_003321_020--Hb_183612_030 Hb_003321_020--Hb_003117_040 Hb_032299_060 Hb_032299_060 Hb_003321_020--Hb_032299_060 Hb_184403_010 Hb_184403_010 Hb_003321_020--Hb_184403_010 Hb_003117_040--Hb_184403_010 Hb_003117_040--Hb_183612_030 Hb_003117_040--Hb_001638_220 Hb_005532_010 Hb_005532_010 Hb_010142_080--Hb_005532_010 Hb_010142_080--Hb_009421_010 Hb_010142_080--Hb_021616_010 Hb_003226_290 Hb_003226_290 Hb_010142_080--Hb_003226_290 Hb_004413_030 Hb_004413_030 Hb_010142_080--Hb_004413_030 Hb_008370_010 Hb_008370_010 Hb_009421_010--Hb_008370_010 Hb_009421_010--Hb_005532_010 Hb_025457_010 Hb_025457_010 Hb_009421_010--Hb_025457_010 Hb_005483_010 Hb_005483_010 Hb_021616_010--Hb_005483_010 Hb_021616_010--Hb_005532_010 Hb_174876_010 Hb_174876_010 Hb_021616_010--Hb_174876_010 Hb_021616_010--Hb_008370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.206848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.469813 0.449588 0

CAGE analysis