Hb_013479_020

Information

Type -
Description -
Location Contig13479: 13246-14085
Sequence    

Annotation

kegg
ID rcu:RCOM_1443450
description zinc finger protein, putative
nr
ID XP_012067431.1
description PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
swissprot
ID P0CE10
description Putative uncharacterized protein At4g01020, chloroplastic OS=Arabidopsis thaliana GN=At4g01020 PE=3 SV=1
trembl
ID A0A067LCT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26932 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable e3 ubiquitin-protein ligase rnf217

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09783: 13196-14963
cDNA
(Sanger)
(ID:Location)		 052_L03.ab1: 13230-13977

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013479_020 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
2 Hb_001504_170 0.0770488597 - - plant poly(A)+ RNA export protein, putative [Ricinus communis]
3 Hb_002942_030 0.086193238 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
4 Hb_019654_070 0.1012587046 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
5 Hb_000028_050 0.1031675517 - - aldose-1-epimerase, putative [Ricinus communis]
6 Hb_000085_340 0.1031990856 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
7 Hb_003627_020 0.1052650922 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
8 Hb_002955_030 0.1101067508 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003055_050 0.1111728 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
10 Hb_002835_190 0.1119443047 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
11 Hb_001846_080 0.1137603243 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
12 Hb_000085_280 0.1157630776 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
13 Hb_000933_140 0.1160935963 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
14 Hb_002391_110 0.1161250374 - - PREDICTED: ribosomal L1 domain-containing protein 1-like [Jatropha curcas]
15 Hb_002851_060 0.1190086333 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
16 Hb_002681_140 0.1193462407 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
17 Hb_012654_020 0.1200993707 - - conserved hypothetical protein [Ricinus communis]
18 Hb_026048_090 0.1228892483 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000172_530 0.1234139825 - - PREDICTED: UBP1-associated protein 2B-like isoform X1 [Jatropha curcas]
20 Hb_003786_110 0.1276075801 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]

Gene co-expression network

sample Hb_013479_020 Hb_013479_020 Hb_001504_170 Hb_001504_170 Hb_013479_020--Hb_001504_170 Hb_002942_030 Hb_002942_030 Hb_013479_020--Hb_002942_030 Hb_019654_070 Hb_019654_070 Hb_013479_020--Hb_019654_070 Hb_000028_050 Hb_000028_050 Hb_013479_020--Hb_000028_050 Hb_000085_340 Hb_000085_340 Hb_013479_020--Hb_000085_340 Hb_003627_020 Hb_003627_020 Hb_013479_020--Hb_003627_020 Hb_001504_170--Hb_002942_030 Hb_002955_030 Hb_002955_030 Hb_001504_170--Hb_002955_030 Hb_003786_110 Hb_003786_110 Hb_001504_170--Hb_003786_110 Hb_000345_560 Hb_000345_560 Hb_001504_170--Hb_000345_560 Hb_000329_610 Hb_000329_610 Hb_001504_170--Hb_000329_610 Hb_004852_020 Hb_004852_020 Hb_002942_030--Hb_004852_020 Hb_026048_090 Hb_026048_090 Hb_002942_030--Hb_026048_090 Hb_000175_520 Hb_000175_520 Hb_002942_030--Hb_000175_520 Hb_001433_170 Hb_001433_170 Hb_002942_030--Hb_001433_170 Hb_098315_100 Hb_098315_100 Hb_019654_070--Hb_098315_100 Hb_000155_080 Hb_000155_080 Hb_019654_070--Hb_000155_080 Hb_003656_030 Hb_003656_030 Hb_019654_070--Hb_003656_030 Hb_019654_070--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_019654_070--Hb_005488_100 Hb_007178_010 Hb_007178_010 Hb_019654_070--Hb_007178_010 Hb_003352_050 Hb_003352_050 Hb_000028_050--Hb_003352_050 Hb_000186_010 Hb_000186_010 Hb_000028_050--Hb_000186_010 Hb_000085_280 Hb_000085_280 Hb_000028_050--Hb_000085_280 Hb_003050_040 Hb_003050_040 Hb_000028_050--Hb_003050_040 Hb_000028_050--Hb_000085_340 Hb_002067_160 Hb_002067_160 Hb_000085_340--Hb_002067_160 Hb_005754_020 Hb_005754_020 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140 Hb_004126_010 Hb_004126_010 Hb_003627_020--Hb_004126_010 Hb_003507_020 Hb_003507_020 Hb_003627_020--Hb_003507_020 Hb_003627_020--Hb_003656_030 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_009510_030 Hb_009510_030 Hb_003627_020--Hb_009510_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.214 3.26199 3.25269 6.14021 76.0539 100.195
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.212 34.3883 22.6931 5.85222 4.21551

CAGE analysis