Hb_013575_010

Information

Type -
Description -
Location Contig13575: 12684-26316
Sequence    

Annotation

kegg
ID rcu:RCOM_1763060
description Hepatocyte growth factor-regulated tyrosine kinase substrate, putative
nr
ID XP_002513254.1
description Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
swissprot
ID Q99LI8
description Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2
trembl
ID B9RHN5
description Hepatocyte growth factor-regulated tyrosine kinase substrate, putative OS=Ricinus communis GN=RCOM_1763060 PE=4 SV=1
Gene Ontology
ID GO:0005622
description tom1-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09951: 13118-22667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013575_010 0.0 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
2 Hb_003057_060 0.0459357458 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002641_060 0.046781879 - - prefoldin subunit, putative [Ricinus communis]
4 Hb_000260_350 0.0596091754 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000375_350 0.0603398293 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
6 Hb_000666_100 0.0612319768 - - Actin-related protein 2/3 complex subunit 2 isoform 2 [Theobroma cacao]
7 Hb_002681_100 0.0612582355 - - PREDICTED: glucuronokinase 1 [Jatropha curcas]
8 Hb_000948_230 0.0613598934 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_017895_040 0.0635880336 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
10 Hb_000345_310 0.0662352689 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X3 [Jatropha curcas]
11 Hb_008616_050 0.0662883505 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
12 Hb_004990_010 0.0664613738 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
13 Hb_004627_040 0.0665363418 - - hypothetical protein POPTR_0010s22770g [Populus trichocarpa]
14 Hb_161574_020 0.0674705932 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
15 Hb_000349_260 0.0697362825 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
16 Hb_000300_500 0.0698815282 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
17 Hb_027380_060 0.070877353 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
18 Hb_002157_120 0.0708951724 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001278_100 0.0710752468 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
20 Hb_001511_060 0.0723633294 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_013575_010 Hb_013575_010 Hb_003057_060 Hb_003057_060 Hb_013575_010--Hb_003057_060 Hb_002641_060 Hb_002641_060 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000375_350 Hb_000375_350 Hb_013575_010--Hb_000375_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100 Hb_003057_060--Hb_002681_100 Hb_003057_060--Hb_000666_100 Hb_000948_230 Hb_000948_230 Hb_003057_060--Hb_000948_230 Hb_161574_020 Hb_161574_020 Hb_003057_060--Hb_161574_020 Hb_004627_040 Hb_004627_040 Hb_003057_060--Hb_004627_040 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_003416_010 Hb_003416_010 Hb_002641_060--Hb_003416_010 Hb_002641_060--Hb_000375_350 Hb_001511_060 Hb_001511_060 Hb_000260_350--Hb_001511_060 Hb_000349_260 Hb_000349_260 Hb_000260_350--Hb_000349_260 Hb_004990_010 Hb_004990_010 Hb_000260_350--Hb_004990_010 Hb_093458_040 Hb_093458_040 Hb_000260_350--Hb_093458_040 Hb_005054_110 Hb_005054_110 Hb_000260_350--Hb_005054_110 Hb_168978_010 Hb_168978_010 Hb_000260_350--Hb_168978_010 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_005496_140 Hb_005496_140 Hb_000375_350--Hb_005496_140 Hb_004545_110 Hb_004545_110 Hb_000666_100--Hb_004545_110 Hb_000666_100--Hb_008616_050 Hb_000200_020 Hb_000200_020 Hb_000666_100--Hb_000200_020 Hb_000666_100--Hb_002641_060 Hb_004058_030 Hb_004058_030 Hb_002681_100--Hb_004058_030 Hb_002681_100--Hb_001511_060 Hb_003304_020 Hb_003304_020 Hb_002681_100--Hb_003304_020 Hb_006573_190 Hb_006573_190 Hb_002681_100--Hb_006573_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2397 11.9667 20.3508 25.9097 14.496 15.1976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5711 22.4801 18.4236 13.2323 15.7333

CAGE analysis